Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_G01
(461 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 121 2e-28
U39674-7|AAA80417.1| 91|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF039046-8|AAB94212.1| 72|Caenorhabditis elegans Caenacin (cae... 29 1.6
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho... 27 4.9
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho... 27 4.9
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh... 27 4.9
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p... 27 4.9
Z81062-6|CAB02949.2| 320|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical ... 27 6.5
Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical pr... 27 8.6
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 27 8.6
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 121 bits (292), Expect = 2e-28
Identities = 58/102 (56%), Positives = 73/102 (71%)
Frame = +1
Query: 154 VRKVSSKPRHGRLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYR 333
V + S P GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA FYAGKR VY+Y+
Sbjct: 6 VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65
Query: 334 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGGVRARFKSN 459
A +T G T+ RAIWGK+TRPHGN+G VRA+F N
Sbjct: 66 AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHN 105
>U39674-7|AAA80417.1| 91|Caenorhabditis elegans Hypothetical
protein C06E2.2 protein.
Length = 91
Score = 29.5 bits (63), Expect = 1.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -2
Query: 268 QSLTKLYFHVGCADHVCNL 212
++LTKL+FH+ CAD++ +
Sbjct: 49 ETLTKLFFHLACADNIIKI 67
>AF039046-8|AAB94212.1| 72|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 2 protein.
Length = 72
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 258 QSCIFMLVAQTTFVTCEYSFGVEPAMTGFRGHFTHHLGWF 139
+S + +LVA F T +Y +G P M G G + +G +
Sbjct: 3 RSILILLVALIAFSTAQYGYGGYPGMMGGYGGYPGMMGGY 42
>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
6-phosphate synthaseprotein 1, isoform b protein.
Length = 1294
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 390 TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 295
TKLS A G+ + F T DIH L+ +EK
Sbjct: 893 TKLSLEADEESGEEKGFEITYDIHDELSEMEK 924
>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
6-phosphate synthaseprotein 1, isoform a protein.
Length = 1331
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 390 TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 295
TKLS A G+ + F T DIH L+ +EK
Sbjct: 930 TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961
>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative trehalose
6-phosphatesynthase protein.
Length = 1331
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 390 TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 295
TKLS A G+ + F T DIH L+ +EK
Sbjct: 930 TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961
>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1331
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 390 TKLSFLATWTPGDRRPFLCTVDIHATLASIEK 295
TKLS A G+ + F T DIH L+ +EK
Sbjct: 930 TKLSLEADEESGEEKGFEITYDIHDELSEMEK 961
>Z81062-6|CAB02949.2| 320|Caenorhabditis elegans Hypothetical
protein F15A4.7 protein.
Length = 320
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 318 ATLASIEKCITAILCTFNL*QSCIFMLVA--QTTFVTC 211
A L+ + I LC ++ SC F+LVA Q TF TC
Sbjct: 222 ACLSDRVRSIERSLCFTSISISCTFLLVAGTQLTFATC 259
>AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical
protein Y106G6G.2 protein.
Length = 821
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 295 VHHCDPLYLQSLTKLYFHVGCADHVCN 215
+ H D L+ L K H GC HV N
Sbjct: 569 ISHPDTYTLEDLKKTVLHSGCVVHVAN 595
>Z66515-2|CAA91353.1| 543|Caenorhabditis elegans Hypothetical
protein R53.3a protein.
Length = 543
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 379 FSCHVDPRGSASFSLHGRHTRNACQHRKVH 290
F CH+ P+ FS N C+HR+VH
Sbjct: 187 FRCHLCPKSYTQFS-------NLCRHRRVH 209
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 379 FSCHVDPRGSASFSLHGRHTRNACQHRKVH 290
F CH+ P+ FS N C+HR+VH
Sbjct: 187 FRCHLCPKSYTQFS-------NLCRHRRVH 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,422
Number of Sequences: 27780
Number of extensions: 211107
Number of successful extensions: 462
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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