Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F24
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   194   2e-51
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   125   2e-30
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   123   5e-30
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    81   5e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    54   4e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    48   2e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    46   1e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    44   5e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    31   0.030
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   0.84 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   1.5  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   3.4  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    24   4.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  194 bits (474), Expect = 2e-51
 Identities = 91/100 (91%), Positives = 97/100 (97%)
 Frame = +1

Query: 10  FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 189
           FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGR
Sbjct: 124 FETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGR 183

Query: 190 DLTDYLMKILTERGYSFTTTAERDIVRDIQEKLCYVALDF 309
           DLTDYLMKIL ERGY+F+TTAER+IVRDI+EKLCYVALDF
Sbjct: 184 DLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDF 223


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  125 bits (301), Expect = 2e-30
 Identities = 54/100 (54%), Positives = 79/100 (79%)
 Frame = +1

Query: 10  FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 189
           +ET N PA+  ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GR
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGR 188

Query: 190 DLTDYLMKILTERGYSFTTTAERDIVRDIQEKLCYVALDF 309
           D+TDYL   L + G+   ++AE++IVR+I+EK CYVA DF
Sbjct: 189 DVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDF 228


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  123 bits (297), Expect = 5e-30
 Identities = 55/99 (55%), Positives = 75/99 (75%)
 Frame = +1

Query: 10  FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 189
           FE +    +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE   L H + RLD+AGR
Sbjct: 124 FERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGR 183

Query: 190 DLTDYLMKILTERGYSFTTTAERDIVRDIQEKLCYVALD 306
           D T YL+ +L  +GY+F  TA+ + VR+++EKLCYV+ D
Sbjct: 184 DATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYD 222


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 80.6 bits (190), Expect = 5e-17
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 10/109 (9%)
 Frame = +1

Query: 10  FETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAI 165
           FE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I
Sbjct: 147 FESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206

Query: 166 LRLDLAGRDLTDYLMKILTERGY--SFTTTAERDIVRDIQEKLCYVALD 306
             + LAGRD+T ++  +L +R    S   TAER     I+E+ CYV  D
Sbjct: 207 KTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPD 250


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 54.4 bits (125), Expect = 4e-09
 Identities = 25/73 (34%), Positives = 46/73 (63%)
 Frame = +1

Query: 91  IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERDIVR 270
           +V+DSG   +H +P+ +      A+ R+D+ G+ LT+YL ++++ R Y+     E  IV 
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216

Query: 271 DIQEKLCYVALDF 309
           +I+E +CYV+ +F
Sbjct: 217 EIKESVCYVSQNF 229


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 48.4 bits (110), Expect = 2e-07
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
 Frame = +1

Query: 10  FETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 183
           FE +N P++   I  + S Y + +  ++GIVL+ G+  SH +P+  G  +     R+   
Sbjct: 139 FELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWG 198

Query: 184 GRDLTDYLMKILTERGYSFTTTAERDIVRDIQEKLCYVALDF 309
           G   + YL+K+   +  SF           +    C+V+ D+
Sbjct: 199 GSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDY 240


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 46.4 bits (105), Expect = 1e-06
 Identities = 27/91 (29%), Positives = 44/91 (48%)
 Frame = +1

Query: 10  FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 189
           FE    P   +A + ++ LYA G   G+V+D G   +   PI +G  +  A  +L L GR
Sbjct: 170 FEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229

Query: 190 DLTDYLMKILTERGYSFTTTAERDIVRDIQE 282
            +T +L  +L E   +  ++ +     DI E
Sbjct: 230 YMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 44.0 bits (99), Expect = 5e-06
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = +1

Query: 10  FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 189
           FE+   PA Y+A Q   + +ASG+ T  ++D G   S    IY+G+ L         +G 
Sbjct: 122 FESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGN 181

Query: 190 DLTDYLMKILTERGY 234
            + D L + L ++ +
Sbjct: 182 AINDILAQTLRDKNF 196


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.5 bits (68), Expect = 0.030
 Identities = 13/64 (20%), Positives = 34/64 (53%)
 Frame = +1

Query: 49  QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 228
           +++ + + +G +   V+D G   +    + EG  +P++ ++++  G D+T   MK+L   
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339

Query: 229 GYSF 240
            + +
Sbjct: 340 HFPY 343


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 0.84
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +2

Query: 17   PSTHPPCT*LSRPCSHC-TRPV--VPPVSCWIPAMVYPTQYPSTRVTPYRTPS 166
            P  HPP   LS+P S     P+  VPPV   + +   P   PS    P   PS
Sbjct: 987  PKDHPPSAPLSKPVSTSPAAPLARVPPVP-KLSSKAPPVPLPSADAPPIPVPS 1038


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 74  PVVPPVSCWIPAMVYPTQYPSTRVTPY 154
           P+      WIP MVYP  +  T+ TP+
Sbjct: 513 PIYSKSDGWIPVMVYP--FIDTKQTPF 537


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 103 SGDGVSHTVPIYEGYALP 156
           +G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 74  PVVPPVSCWIPAMVYPTQYPSTRVTPYRTPS 166
           PV  PV  + P M  P+Q+ S   +P  TP+
Sbjct: 599 PVGYPVPGYTPYMRNPSQHTSVAPSPNGTPT 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,329
Number of Sequences: 5004
Number of extensions: 23793
Number of successful extensions: 68
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)