Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F23
         (549 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.       36   0.094
AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens ...    36   0.094
AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 1...    34   0.29 
AB097001-1|BAC77354.1|  910|Homo sapiens putative NFkB activatin...    31   2.7  
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.       30   4.6  
AB012644-1|BAA32813.1|  227|Homo sapiens TAP1N protein.                30   6.1  

>BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.
          Length = 336

 Score = 35.9 bits (79), Expect = 0.094
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 104 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 277
           KQ  AS  C+S  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 278 RYIYLSGT 301
               L GT
Sbjct: 224 VSSLLGGT 231


>AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10936 fis, clone OVARC1000959, weakly similar to
           HYPOTHETICAL PROTEIN MJ0933. ).
          Length = 298

 Score = 35.9 bits (79), Expect = 0.094
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 104 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 277
           KQ  AS  C+S  AA+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 278 RYIYLSGT 301
               L GT
Sbjct: 224 VSSLLGGT 231


>AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 19
           variant protein.
          Length = 336

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 104 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 277
           KQ  AS  C+S   A+A   G+ WA   G  +SK    +++  +E   + T+GGVT+ G 
Sbjct: 165 KQYSASWMCLSLLVALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223

Query: 278 RYIYLSGT 301
               L GT
Sbjct: 224 VSSLLGGT 231


>AB097001-1|BAC77354.1|  910|Homo sapiens putative NFkB activating
           protein protein.
          Length = 910

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 179 EGFEISKDEVAKIVAGFENESLLTS-GGVTIAGTRYIYLSGTERIIRAKLGKVGVHC 346
           E  E S DEV K++  F +  L     G +  GTR + L G+ R+   K  K+ V+C
Sbjct: 455 EVVESSSDEVDKLLKEFLHLDLTAPIPGASPEGTRQLLLEGSLRMKEGKDSKMDVYC 511


>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
          Length = 1192

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +1

Query: 244 SNKRRCYDSGHAVHLPQRYRTYHTRKARQGRRALHEDTASRRNFSL*RTHSTPAGRIRSR 423
           S  R  YD G     P R+R+Y   + R+  R  H D  +RR+ SL R++     R  SR
Sbjct: 263 SRYRSDYDRGRT---PSRHRSYERSRERERERHRHRD--NRRSPSLERSYKKEYKRSGSR 317

Query: 424 EVRR 435
              R
Sbjct: 318 SPSR 321


>AB012644-1|BAA32813.1|  227|Homo sapiens TAP1N protein.
          Length = 227

 Score = 29.9 bits (64), Expect = 6.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 257 RRLLEVIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHIWRPL 111
           RRLL  + S+ R+LS  L L++  +L  WP H  R   L     + +P+
Sbjct: 174 RRLLGCLGSETRRLSLFLVLVVLSSLGRWPFHSLRAASLTGFYKMAQPI 222


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,696,844
Number of Sequences: 237096
Number of extensions: 1454655
Number of successful extensions: 2646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2646
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)