Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F23
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          228   3e-62
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  228 bits (557), Expect = 3e-62
 Identities = 102/126 (80%), Positives = 118/126 (93%)
 Frame = +2

Query: 80  MSWQDYVDKQLMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 259
           MS QDYVDKQL+ASRCV+KAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE + +LTS G
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSG 60

Query: 260 VTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDY 439
           VT+AG RYIYLSGT+R+IRAKLGKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKLGDY
Sbjct: 61  VTLAGNRYIYLSGTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDY 120

Query: 440 LITCGY 457
           L++CGY
Sbjct: 121 LVSCGY 126


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 289 PQRYRTYHTRKARQGRRALHEDTAS 363
           PQR  T  TR   +  RAL  DT +
Sbjct: 40  PQRIHTVRTRGGNKKYRALRLDTGN 64


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 92  DYVDKQLMASRCVSKAAIAGHDGN 163
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 341 HCMKTQQAVVIS 376
           HC+ T+Q+VV++
Sbjct: 822 HCVTTEQSVVVT 833


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,612
Number of Sequences: 438
Number of extensions: 2839
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)