Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F22
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 29 0.31
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 29 0.40
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 0.93
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 0.93
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 2.2
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 2.9
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 5.0
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 25 5.0
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 5.0
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 5.0
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su... 25 6.6
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 6.6
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 25 6.6
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 29.1 bits (62), Expect = 0.31
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 339 LFNVEEQCQ-RHYTGHTDDVQCLAVHPN 419
L++VE R + GH +DV C++ HPN
Sbjct: 471 LWDVEHAAPLRVFVGHQNDVDCVSFHPN 498
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 28.7 bits (61), Expect = 0.40
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 198 DPAKVAPPPQNKLKLEWVYGYRVKDCRSNLYLLPTG--EIVYFVAA 329
DP KVAPP K+ +Y + + NLY TG +YF AA
Sbjct: 66 DPRKVAPPNSFLKKISLIYQKYISP-KQNLYYEATGTARYMYFEAA 110
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 0.93
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 360 CQRHYTGHTDDVQCLAVHPN 419
C+ YTGHTD V +AV P+
Sbjct: 530 CKATYTGHTDFVLSVAVSPD 549
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 0.93
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 366 RHYTGHTDDVQCLAVHPN 419
R + GH DV C+ HPN
Sbjct: 457 RVFAGHLSDVDCVTFHPN 474
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 2.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 154 PRRYILIDPSSSLYW 110
P R++L+DPS YW
Sbjct: 445 PSRFVLMDPSRMFYW 459
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 2.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 152 RPAGHYVRPKRPGG 193
RP GH+ P +PGG
Sbjct: 190 RPPGHHAEPHKPGG 203
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 206 SRIQDLPVAWAVHNDRPASEVHPH*PVLFIVLACM 102
SRIQ L AW + N++ S+++ + I+L CM
Sbjct: 242 SRIQTLSAAWLLLNEK--SDLNVDLCKILIILTCM 274
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 145 TSEAGRSLCTAQATGRSWILLKWPRRHRINSNSNGSMDTGL 267
T +G C W+ + RRH++ SN + S TG+
Sbjct: 196 TQPSGVLKCAGAPQKIMWMAEDYWRRHKVRSNIDVSFYTGM 236
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 5.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -3
Query: 230 ILWRRGHFSRIQDLPVAWAVHNDRP 156
I W+ F ++QDL + + H++ P
Sbjct: 206 IFWKSSLFKKVQDLTIYYDDHDELP 230
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 366 RHYTGHTDDVQCLAVHP 416
RHY GH V L +HP
Sbjct: 241 RHYHGHLSGVYALKLHP 257
>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 366
Score = 24.6 bits (51), Expect = 6.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 184 TGRSWILLKWPRRHRINSNSNGSMDTGLRIAGATCIYSQLGR 309
T RSW LL R +S+SNG + +R A + + ++ R
Sbjct: 13 TSRSWKLLSSTIAKRYSSSSNGVKEMTVRDALNSAMEEEMKR 54
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 100 VIEVNDIVAALMY*KS*FFFASAHINKHPRVI 5
VIE +D+V ++ ++ FF SAH+ ++ + +
Sbjct: 167 VIERSDVVVQIVDARNPLFFRSAHLEQYVKEV 198
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 24.6 bits (51), Expect = 6.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 372 YTGHTDDVQCLAVHPN 419
YTGH + + C+A+ P+
Sbjct: 364 YTGHQEPILCMAITPD 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,375
Number of Sequences: 5004
Number of extensions: 40982
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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