Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F22
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 29 1.6
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 1.6
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897 28 2.8
01_01_0247 + 2023019-2023802,2023894-2023997 28 3.7
10_08_0774 + 20478203-20479393 27 4.9
02_05_1277 - 35408097-35409080 27 4.9
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715... 27 6.4
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 27 8.5
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 27 8.5
02_02_0616 - 12160899-12161506,12161698-12161821,12161974-121620... 27 8.5
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 27 8.5
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 27 8.5
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 275 PEQLVS-TPNWGD-SVLRGSCGSAVQRRGTVPETLHGAYG*RPMPRGSS 415
P+ L S T ++G S++RG G R HG+Y P P+GSS
Sbjct: 167 PDVLGSGTGHYGHGSIMRGGGGMTPPRSSIDASPYHGSYSRSPAPQGSS 215
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 332 GSAVQRRGTVPETLHGAYG*RPMPRGSSKQA 424
G A +G++P + G YG RPMP G A
Sbjct: 365 GGAPGGQGSLPPSYDGGYGGRPMPGGGGPGA 395
>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
Length = 922
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 168 MYGPSDREVLDPAKVAPPPQNKLKLEWVYGYRVKDCRSNLYLL 296
++ P R VLDP + PP + L+L+ + CR L L+
Sbjct: 85 LHHPVFRSVLDPPDLIPPDRFALRLDDYRAASLLGCRHGLVLI 127
>01_01_0247 + 2023019-2023802,2023894-2023997
Length = 295
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 269 LNPVSIDPFEFEFILWRRGHFSRIQDLPVAWA 174
L P I P E I + SR+Q LP +WA
Sbjct: 126 LTPFKISPINRELIFLYNCNQSRLQQLPPSWA 157
>10_08_0774 + 20478203-20479393
Length = 396
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 256 P*THSSLSLFCGGGATLAGSKTSRSLGPYIMTGRP 152
P T S +LF G A LAG+ P++ T P
Sbjct: 203 PDTGKSSALFLGASAKLAGAGKGAGTTPFVKTSTP 237
>02_05_1277 - 35408097-35409080
Length = 327
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 72 AATMSFTSITHTCQYNEEDGSMRMYLRGRPVIMYGPSDREVLDPAKVAPPP 224
A T + T+ T T +++GS + L + + PSD E + P PPP
Sbjct: 248 ATTAATTAATATAPDTKKEGSTSINLE-LDLNLPAPSDEESVSPPPPPPPP 297
>03_02_0939 +
12571052-12571173,12571219-12571309,12571413-12571512,
12571726-12571807,12571897-12571953,12572632-12572713,
12572792-12572884,12573984-12574047,12574161-12574246,
12574329-12574430,12574526-12574609,12574885-12574945,
12575010-12575091,12575173-12575250,12575867-12575931,
12576108-12576185,12576278-12576450
Length = 499
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 366 RHYTGHTDDVQCLAVHP 416
R Y GH V CLA+HP
Sbjct: 262 RSYHGHLSGVYCLALHP 278
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = -3
Query: 350 DVEQHYHSCHEVHYLPSWE*IQVAPAILNPVSIDPFEFEFILWRRGHFSRIQDLPVAWAV 171
+ +H+ HE H L +Q IL+P ++ + +E +L + + Q L V +
Sbjct: 98 EARSFFHTFHEDHELMHSRDLQKLEGILSPSHLE-YSYELLL---QYLQKTQAL-VVLGI 152
Query: 170 HNDRPASEVHPH*PVL 123
N+R +V P P L
Sbjct: 153 INERTTFDVSPGQPSL 168
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 177 PSDREVLDPAKVAPPPQ 227
P+ E LDP APPPQ
Sbjct: 31 PASEEALDPQTPAPPPQ 47
>02_02_0616 -
12160899-12161506,12161698-12161821,12161974-12162083,
12162119-12162271,12162545-12162779
Length = 409
Score = 26.6 bits (56), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 242 RMGLWIQG*GLPEQLVSTPNW 304
R W +G GLP Q+++ P W
Sbjct: 143 RAAKWFRGVGLPWQVITWPQW 163
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 26.6 bits (56), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 372 YTGHTDDVQCLAVHPNK 422
+ HTD ++C+AVHP +
Sbjct: 108 FEAHTDYIRCVAVHPTQ 124
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 26.6 bits (56), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 372 YTGHTDDVQCLAVHPNK 422
+ HTD ++C+AVHP +
Sbjct: 122 FEAHTDYIRCVAVHPTQ 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,388
Number of Sequences: 37544
Number of extensions: 308092
Number of successful extensions: 899
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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