Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F22
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...   105   1e-23
Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p...    28   2.5  
Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical p...    28   2.5  
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ...    28   2.5  
AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical ...    28   2.5  
AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical...    28   3.3  
U64857-5|AAN84848.1|  143|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical ...    27   4.3  
AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical ...    27   5.7  
U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    26   10.0 
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    26   10.0 

>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score =  105 bits (253), Expect = 1e-23
 Identities = 49/110 (44%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +3

Query: 105 TCQYNEEDGSMRMYLRGRPVIMYGPSDREVLDPAKVAPPPQNKLKLEWVYGYRVKDCRSN 284
           TCQ++   G + +++ G+ V +  P+  E +DP     PP  K+ L+ VY YR KD RSN
Sbjct: 237 TCQFSNGSGHLPIFIGGKTVQVPVPTGYENMDPTMDQDPPTMKVTLKHVYSYRGKDVRSN 296

Query: 285 LYLLPTGEIVYFVAAVVVLFNV--EEQCQRHYTGHTDDVQCLAVHPNKLV 428
           + +LPTGE+V+F A +VVL N+  E++ QR Y GHT DV+C+ +HPNK++
Sbjct: 297 IEMLPTGELVFFSANLVVLMNITGEDRSQRIYHGHTCDVKCITLHPNKIL 346


>Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 366 RHYTGHTDDVQCLAVHPN 419
           RHY GH   VQ L+VHP+
Sbjct: 262 RHYHGHLSAVQALSVHPS 279


>Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 366 RHYTGHTDDVQCLAVHPN 419
           RHY GH   VQ L+VHP+
Sbjct: 262 RHYHGHLSAVQALSVHPS 279


>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 APPPQNKLKLEWVYGYRVKDCRSNLY 290
           APP QN++K  W+ G  V+ C  N++
Sbjct: 235 APPSQNRVKFGWIQGVFVR-CLLNIF 259


>Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 APPPQNKLKLEWVYGYRVKDCRSNLY 290
           APP QN++K  W+ G  V+ C  N++
Sbjct: 235 APPSQNRVKFGWIQGVFVR-CLLNIF 259


>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 APPPQNKLKLEWVYGYRVKDCRSNLY 290
           APP QN++K  W+ G  V+ C  N++
Sbjct: 235 APPSQNRVKFGWIQGVFVR-CLLNIF 259


>AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 APPPQNKLKLEWVYGYRVKDCRSNLY 290
           APP QN++K  W+ G  V+ C  N++
Sbjct: 235 APPSQNRVKFGWIQGVFVR-CLLNIF 259


>AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical
           protein Y43F8C.3 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 60  QYINAATMSFTSITHTCQYNEEDGSMRM 143
           +Y    T  F    H CQY +EDG++ M
Sbjct: 372 EYTIVGTPIFAYFDHLCQYLDEDGALLM 399


>U64857-5|AAN84848.1|  143|Caenorhabditis elegans Hypothetical
           protein C37C3.13 protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 208 LAGSKTSRSLGPYIMTGRPRRYILIDPSSSLY 113
           L    T+ SLG +++TG     + IDP  ++Y
Sbjct: 58  LLAEGTTDSLGQFLLTGHTSEVMTIDPKLNIY 89


>AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical
           protein C05D2.10b protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 360 CQRHYTGHTDDVQCLAVHPN 419
           C   YTGHT  V C+A+  N
Sbjct: 174 CLATYTGHTGSVNCVAISNN 193


>AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical
           protein C05D2.10a protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 360 CQRHYTGHTDDVQCLAVHPN 419
           C   YTGHT  V C+A+  N
Sbjct: 172 CLATYTGHTGSVNCVAISNN 191


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 142 CTSEAGRSLCTAQATGRSWILLKWPRRHRINSNS 243
           C +   +SLC   +TG  +I  ++  + R  +NS
Sbjct: 50  CVASTSKSLCLGTSTGSVYIFSRYAAKSRSRTNS 83


>AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical
           protein Y81G3A.5 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 134 NEDVPPRPAGHYVRPKRPGGLGSC-*SGPAATE 229
           N + PP P G   +P +PG +G    SGP  ++
Sbjct: 233 NSNGPPGPPGQMGQPGKPGSMGGLGQSGPTGSD 265


>U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK430.7 protein.
          Length = 444

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 378 GHTDDVQCLAVHPNK 422
           GH D VQ LA HPN+
Sbjct: 64  GHVDGVQVLAKHPNR 78


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 255 GYRVKDCRSNLYLLPTGEIVYFVAAVVVLFNVE-EQCQRHYTGHTDDVQCLAVHPNKL 425
           G    D + NL L  TG I       VVL++ E EQ  + + GH   +  + +HP+ +
Sbjct: 213 GITALDIKGNLSL--TGGI----DKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNI 264


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 278 EQLVSTPNWGDSVLRGSCGSA 340
           E L+STP  GDS+L  SC  A
Sbjct: 785 ENLISTPVSGDSMLGDSCSIA 805


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 278 EQLVSTPNWGDSVLRGSCGSA 340
           E L+STP  GDS+L  SC  A
Sbjct: 824 ENLISTPVSGDSMLGDSCSIA 844


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,982,738
Number of Sequences: 27780
Number of extensions: 244617
Number of successful extensions: 677
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)