Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F22
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 60  QYIN-AATMSFTSITHTCQYNE 122
           Q++N AAT+SF  + H  Q N+
Sbjct: 562 QFLNTAATLSFCEMIHNAQVNK 583


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 311 YLPSWE*IQVAPAILNP 261
           +LPSW+     P IL P
Sbjct: 27  FLPSWDGKMPQPCILKP 43


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 417 LDEPRGIGRHPYAPCNVSGTVPRR*TALPQLP 322
           +DE     R P   C+ +G VP +   L   P
Sbjct: 575 VDEVEFYKRRPQRACSTTGGVPSKSPTLTHSP 606


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 416 WMNREALDVIRMPRVMSLALFLD 348
           +MN   L++ + PR ++L +F +
Sbjct: 483 YMNECLLNIQKSPRTLTLGIFAE 505


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 317 VHYLPSWE*IQVAPAILNPVSIDPFEFEFILWRRGHFSRIQDLPVAWAVHN 165
           V +LP +    V P + NP +I  F     LW  G+ + + + P+ +A  N
Sbjct: 383 VCWLPFFVLALVRPFLKNPDAIPAFLSSLFLW-LGYCNSLLN-PIIYATLN 431


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 208 KWPRRHRINSNSNGSM 255
           K PRRHR    SNG +
Sbjct: 109 KCPRRHRPVCASNGKI 124



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +3

Query: 249 VYGYRVKDCRSNLYLLPTGEIV 314
           +YG+ + +C+  +   PTG+++
Sbjct: 706 LYGFVIIECQEPVTNRPTGQLL 727


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,258
Number of Sequences: 438
Number of extensions: 3165
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)