Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F21
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    29   0.35 
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    25   5.6  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    24   7.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.4  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 231 KLKRTEEFIQRGRSRKYTAKVIYKKVFFFKGMRVHP*SLSYV 356
           +L RTE    RGRS  YT     K   +F   R+H  + SY+
Sbjct: 540 RLTRTEAGCLRGRSSHYTELSTQKNGVYFTTKRLHSLNNSYM 581


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 315 KKTPFYILL*LCTCGCARVV*ILQCVLIFFLQYPN 211
           K  P YIL    T GC  V  +   V+ F L+Y N
Sbjct: 436 KNAPKYILGNAFTLGCVIVGGLAYVVMFFSLRYVN 470


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 231 FFLQYPNYFQKLKGY 187
           +F  YPN F K KGY
Sbjct: 350 YFFAYPNVFVKGKGY 364


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 372 LKSLRQHMTTIMDVPAFL*KKTPFYILL*LCTC 274
           LK+L +    + +  AFL K  P YI    CTC
Sbjct: 2   LKTLSKVSKNLSNTSAFLVKSKPLYIS--FCTC 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,012
Number of Sequences: 5004
Number of extensions: 26441
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)