Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F21
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0983 - 33583784-33583994,33584060-33584919                       31   0.25 
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    28   2.4  
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653...    26   9.6  

>01_06_0983 - 33583784-33583994,33584060-33584919
          Length = 356

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 176 LPPNRRRSKSVRQN*NCIYCIGIVYPFSKKKLTLQIYTIMLFISTH-C*TY*YSHLYG 6
           LP +  RS + + + +C YC G   P     L LQ++   LF+  H C  Y +  + G
Sbjct: 157 LPADDPRSFAAQASVHCAYCDGSYSPDGFPGLDLQVHNSWLFMPFHRCYLYFFERILG 214


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -1

Query: 170 PNRRRSKSVRQN*NCIYCIGIVYPFSKKKLTLQIYTIMLFISTH 39
           PNR  S  V     C+ C   VYP  K  L    Y    F  TH
Sbjct: 98  PNRFSSMFVGTQDKCVVCNKTVYPLEKVNLNGSSYHKSCFRCTH 141


>07_03_1284 +
           25463476-25463557,25465088-25465220,25465307-25465378,
           25465476-25465544,25465629-25465700,25465792-25465860,
           25466155-25466220,25466299-25466364,25466452-25466786,
           25466931-25467214,25467796-25468067,25468152-25468287,
           25468625-25468755,25468890-25469046,25469185-25469327,
           25470105-25470190,25471530-25472962,25474563-25474712,
           25475221-25475322,25475467-25475568
          Length = 1319

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 325 IPLKKNTFLYITLAVYLRLRPRCINSSVRFNFFFTVP*LFSKIKRVPK 182
           + + ++  LY T   Y+  +PR +NS+VR         L  K+K + K
Sbjct: 791 VNITRHACLYETSPAYVTDQPRFLNSAVRGTTKLEPHELLKKLKEIEK 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,197,109
Number of Sequences: 37544
Number of extensions: 134844
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)