Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F21
         (395 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022344-1|AAY54760.1|  350|Drosophila melanogaster IP11306p pro...    27   9.0  
AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein ...    27   9.0  
AE014298-2472|AAF48660.3|  322|Drosophila melanogaster CG32568-P...    27   9.0  

>BT022344-1|AAY54760.1|  350|Drosophila melanogaster IP11306p
           protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -3

Query: 252 ILQCVLIFFLQYPNYFQK-LKGYLS-YPST 169
           +++C++ F  QYP++ +K +KG L  +P T
Sbjct: 186 LIKCIIAFLNQYPSFIEKYVKGLLRLWPKT 215


>AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein
           protein.
          Length = 951

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 391 PSMYT*T*KFTATYDNDYGCTRIPLKKNT 305
           P  YT T    ATY N  GC++IP   N+
Sbjct: 212 PPTYTHTQTSKATYTNLEGCSKIPALANS 240


>AE014298-2472|AAF48660.3|  322|Drosophila melanogaster CG32568-PA
           protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -3

Query: 252 ILQCVLIFFLQYPNYFQK-LKGYLS-YPST 169
           +++C++ F  QYP++ +K +KG L  +P T
Sbjct: 158 LIKCIIAFLNQYPSFIEKYVKGLLRLWPKT 187


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,478
Number of Sequences: 53049
Number of extensions: 243283
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)