Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F21
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    29   0.91 
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    29   0.91 
AF188749-1|AAF00546.1|  335|Caenorhabditis elegans putative tyro...    26   8.5  

>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 334 CTRIPLKKNTFLYITLAVYLRLRPRCINSSVRFNFFFTVP*LFSKIKRVPKLSFH 170
           C  +P KKN   YI++       P  +NSS      FT   +F   K+V K + H
Sbjct: 36  CLLLPKKKNRVDYISIMQTAEFYPELVNSSPPLEPGFTSCEVFVVDKKVDKDTLH 90


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 334 CTRIPLKKNTFLYITLAVYLRLRPRCINSSVRFNFFFTVP*LFSKIKRVPKLSFH 170
           C  +P KKN   YI++       P  +NSS      FT   +F   K+V K + H
Sbjct: 36  CLLLPKKKNRVDYISIMQTAEFYPELVNSSPPLEPGFTSCEVFVVDKKVDKDTLH 90


>AF188749-1|AAF00546.1|  335|Caenorhabditis elegans putative
           tyrosine kinase receptorW04G5.6A protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 288 KVIYKKVFFFKGMRVHP*SLSYVAVNF*V*VYIDG 392
           K++Y+++    GM+ HP  LS V V   +  Y++G
Sbjct: 74  KLVYEELKVMCGMKKHPNILSLVGVVMLIMEYVEG 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,800,144
Number of Sequences: 27780
Number of extensions: 143843
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)