Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F20
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   178   4e-46
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   2.3  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   3.0  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   6.9  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   9.1  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    25   9.1  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  178 bits (434), Expect = 4e-46
 Identities = 79/129 (61%), Positives = 101/129 (78%)
 Frame = +1

Query: 139 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 318
           E+TF+ VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 319 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 498
           V +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 499 SANKEIALW 525
           SAN+EI LW
Sbjct: 124 SANREIKLW 132


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 224 KPFFSKRSMIVPTRPR*TPSGLT 156
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +1

Query: 316 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 480
           L++     P++  V  GL +++ G ++   T+P+      GT+ GD C+++G   NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 7   GTIKCGILISLYFISIKLN 63
           G + CG+ ++ YF SIK N
Sbjct: 122 GFLACGLYVTSYFFSIKNN 140


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 525 PESDFLVSRFDTIGTVDDITSNLDT*VSANGTGLRISWIGSTEHLTASFDDIQALPNHGN 346
           PE+  L  RF ++  V   +SN D    ++  G+R+S I S + +           N   
Sbjct: 19  PENKKLSHRFKSVEIVPPSSSNDDPFGFSSTKGIRLSSINSNDLVNTLSKGFNETSNMSY 78

Query: 345 NR 340
           NR
Sbjct: 79  NR 80


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 429 RYHSRRLMYPSWT 467
           RY  R+ +YPSWT
Sbjct: 669 RYDLRQFLYPSWT 681


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 292 ASRPFFPGLVK--YMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVG 465
           +SR     LVK  Y+SS           +   + +++   T+ +   PGTI   LCI+ G
Sbjct: 32  SSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILKGLCIKAG 91

Query: 466 RNIIHGSDSVESANKEIALW 525
                G D V   + E   W
Sbjct: 92  -----GVDPVAREDHEYPEW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,820
Number of Sequences: 5004
Number of extensions: 44184
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)