Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F20
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 188 2e-48
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 188 3e-48
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 187 4e-48
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 183 7e-47
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 30 0.99
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 29 3.0
03_02_0207 - 6411324-6412895 28 5.3
10_08_1046 + 22542074-22544749,22544837-22545544 27 7.0
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 27 7.0
04_03_0320 - 14316934-14318550 27 9.2
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 27 9.2
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 188 bits (458), Expect = 2e-48
Identities = 82/129 (63%), Positives = 105/129 (81%)
Frame = +1
Query: 139 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 318
E++F+M+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 319 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 498
V+Y+ SGPVV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IHGSDSV+
Sbjct: 62 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVD 121
Query: 499 SANKEIALW 525
+ KEIALW
Sbjct: 122 NGKKEIALW 130
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 188 bits (457), Expect = 3e-48
Identities = 81/129 (62%), Positives = 105/129 (81%)
Frame = +1
Query: 139 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 318
E+TF+M+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 319 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 498
V+Y+ SGPVV MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IHGSDSVE
Sbjct: 64 VEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVE 123
Query: 499 SANKEIALW 525
+A KEIALW
Sbjct: 124 NARKEIALW 132
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 187 bits (456), Expect = 4e-48
Identities = 84/136 (61%), Positives = 104/136 (76%)
Frame = +1
Query: 118 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 297
E A + ERTF+ +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL
Sbjct: 39 EAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKD 98
Query: 298 RPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNII 477
RPFF GL ++SSGPV+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNII
Sbjct: 99 RPFFNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNII 158
Query: 478 HGSDSVESANKEIALW 525
HGSD E+A EI LW
Sbjct: 159 HGSDGPETAKAEIGLW 174
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 183 bits (446), Expect = 7e-47
Identities = 78/129 (60%), Positives = 103/129 (79%)
Frame = +1
Query: 139 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 318
E++++M+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 319 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 498
++Y++SGPVV M WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++HGSDS +
Sbjct: 63 IEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPD 122
Query: 499 SANKEIALW 525
+ +EIALW
Sbjct: 123 NGKREIALW 131
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 30.3 bits (65), Expect = 0.99
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = +3
Query: 246 RLALGRVAAATLQ*LSVPP------VFPWSCKIHEFWT-GCSHGLGGPE 371
RLALG V LQ ++PP PW H+FW G G PE
Sbjct: 442 RLALGSVVDVVLQNTAIPPPNGRSETHPWHLHGHDFWVLGYGEGKFVPE 490
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 515 ISLLADSTLSEPWMILRPTWIHKSPRMVPG*ESAGLVAPSI*RPVLTTFRPSQTMGTTG 339
++L + +T PW R W+ S R++ G + G+ PS+ VL F ++ G
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLG-MAEGVALPSMNNMVLRWFPRTERSSAVG 228
>03_02_0207 - 6411324-6412895
Length = 523
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 118 EIMADQRERTFLMVKPDGVQRGLV---GTIIERFEKKGF 225
E+++ Q RTF++ +P GV RG++ +ERF + GF
Sbjct: 64 EVLSRQPTRTFVLRRPGGV-RGVITANPANVERFLRSGF 101
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 139 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 312
ER +VK +G G FE KG G +WP ++ + H +L S+P+ P
Sbjct: 195 ERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSKPWRP 251
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 292 ASRPFFPGLVKYMSSGPVVP 351
ASRPF PGL++ PV+P
Sbjct: 22 ASRPFLPGLLEAALRAPVLP 41
>04_03_0320 - 14316934-14318550
Length = 538
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 349 EQPVQNSCILQDQGKTGGTLSHCNVA-AATLPRARR 245
++P QN C+ G GG + C+ +AT P R
Sbjct: 449 DKPRQNCCVRSPDGLVGGVVMTCHAGWSATSPSCSR 484
>03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 352 MVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVESANKEIA 519
M+WE L +VK +++ + + T+ D CI G +++ DS N++IA
Sbjct: 995 MIWESLGIVKENQELHKGSVEIEDDFATL-ADKCIFPG-DVLWVKDSEIYENRDIA 1048
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,361
Number of Sequences: 37544
Number of extensions: 305136
Number of successful extensions: 765
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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