Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F19
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   3.6  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    26   3.6  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   4.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   6.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.4  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 130 VLGIVKDCVDDDVYMCLKEKVL 195
           V+  VK+ +DDD+Y  LKEK+L
Sbjct: 107 VVNCVKE-IDDDLYNTLKEKLL 127


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 411 RRNQKVP*RRSWSEEEDQA 467
           +R ++V  RRSW++EE++A
Sbjct: 397 KRTRRVANRRSWTKEEEEA 415


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 371 SKKSAAESTNLDSTCASLAFGSSDSGSKARA 279
           +K + ++ +NL++  A L FG   + S ARA
Sbjct: 329 AKSTKSDDSNLNANFARLGFGQFAAASNARA 359


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -1

Query: 248 TPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMPKTL-----PPIPRSVDS 99
           +PS    S      S+ F+ FS R     SST +L +   L     PP PR+  S
Sbjct: 584 SPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPS 638


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 134  WALLRTVSTMTCICASRRRF 193
            W L +TV +M CI A +R F
Sbjct: 1702 WCLAKTVLSMLCIIAIQRFF 1721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,601
Number of Sequences: 5004
Number of extensions: 37619
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)