Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F19
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    29   2.5  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    29   2.5  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    29   2.5  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   7.6  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   7.6  
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    27   7.6  
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform b protein.
          Length = 1284

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 215  LKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRS 108
            LKV   F+++S R  + S  T SLT  KT+  IP+S
Sbjct: 965  LKVFTDFRSWSYRMRHISGCTVSLTNDKTVIRIPKS 1000


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform a protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 215  LKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRS 108
            LKV   F+++S R  + S  T SLT  KT+  IP+S
Sbjct: 961  LKVFTDFRSWSYRMRHISGCTVSLTNDKTVIRIPKS 996


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 215  LKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRS 108
            LKV   F+++S R  + S  T SLT  KT+  IP+S
Sbjct: 961  LKVFTDFRSWSYRMRHISGCTVSLTNDKTVIRIPKS 996


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 216  PQSLCIFQNLLLEAHIHVIVDTVLNNAQNAATDSKICRFLFGGHRAHRRD 67
            P+ +    N     ++ V++D V  N+     +SK   FL   HR HR D
Sbjct: 3292 PEQVISLCNWASSKNLRVVIDEVFANSVFDKLNSKFRPFLSYRHRLHRPD 3341


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 216  PQSLCIFQNLLLEAHIHVIVDTVLNNAQNAATDSKICRFLFGGHRAHRRD 67
            P+ +    N     ++ V++D V  N+     +SK   FL   HR HR D
Sbjct: 3292 PEQVISLCNWASSKNLRVVIDEVFANSVFDKLNSKFRPFLSYRHRLHRPD 3341


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 296 GSKARADIGEPLLSKVTPSIKVISLFDLKVSAYFKTFSL 180
           GS A  +IG  LLS   P +   S   L VS+ F++ SL
Sbjct: 477 GSTATVEIGSGLLSAFKPILSASSSNLLSVSSPFQSLSL 515


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
 Frame = +1

Query: 94    EQESTD--LGIGGSVLGIVKDCVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKG 267
             +Q+ TD  L +   +    K   D+   +  +EK+ K +E   +++E  L D + LES+ 
Sbjct: 13209 KQKETDEKLKLDAEIAAKTKQEADEKSKLDAQEKIKKVSEDDAARKEKELNDKLKLESEI 13268

Query: 268   SPMSARALE-PLSDEPKARE-AQVES 339
             +   A A +  L ++ +A++ A+VE+
Sbjct: 13269 ATKKASADKLKLEEQAQAKKAAEVEA 13294


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
 Frame = +1

Query: 94    EQESTD--LGIGGSVLGIVKDCVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKG 267
             +Q+ TD  L +   +    K   D+   +  +EK+ K +E   +++E  L D + LES+ 
Sbjct: 13209 KQKETDEKLKLDAEIAAKTKQEADEKSKLDAQEKIKKVSEDDAARKEKELNDKLKLESEI 13268

Query: 268   SPMSARALE-PLSDEPKARE-AQVES 339
             +   A A +  L ++ +A++ A+VE+
Sbjct: 13269 ATKKASADKLKLEEQAQAKKAAEVEA 13294


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 253 LESKGSPMSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFKMPSSAV 411
           +ESK S  ++R  +   ++  A +A + + + D+A +  EN+ +  K+ SS +
Sbjct: 35  IESKMSAQASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGI 87


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 150 VLNNAQNAATDSKICRFLFGGHRAHRRD*K 61
           V+ ++ ++  D ++ +F+ G HR H  D K
Sbjct: 637 VIRDSVDSVEDERLAKFVVGNHRTHHPDAK 666


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  DAHRTGIYRSWNRWQRF 134
           DAHRTG+ R WN  + F
Sbjct: 520 DAHRTGVSRWWNSIKAF 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,126,696
Number of Sequences: 27780
Number of extensions: 223329
Number of successful extensions: 603
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)