Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F18
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...   202   9e-54
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   1.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   1.1  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   1.1  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   4.4  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   4.4  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    24   5.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score =  202 bits (494), Expect = 9e-54
 Identities = 88/111 (79%), Positives = 99/111 (89%)
 Frame = +1

Query: 10   DTMDNTTTQKYWLDIQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAY 189
            D +DNTTT KYW+D+QLR+GDYDSHD+ERY RAKFLDY+TD  S+YPSPTG+LI IDL Y
Sbjct: 1674 DVLDNTTTNKYWIDVQLRFGDYDSHDIERYTRAKFLDYSTDAQSMYPSPTGVLIGIDLCY 1733

Query: 190  NLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTE 342
            N+HSAYGNW PG KPLIQQ+M KIMKANPALYVLRERIRK LQLY+SEP E
Sbjct: 1734 NMHSAYGNWIPGMKPLIQQSMNKIMKANPALYVLRERIRKGLQLYASEPQE 1784


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 216 PVPISAV-QIIGEVYGDKQTRRRWIYRHVVGRVVEELGAGVTLH 88
           P+ +S + QIIG +      R +W+Y  ++GR+   +G  + L+
Sbjct: 157 PLIVSCISQIIGHLLYSLAYRAQWLYLILIGRMCSGVGFTMFLY 200


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 326 EYNCSALRIRSLSTYSAGLAFIIFAIACCMRGLHPGNQFP 207
           E  C    IR+ ++   G+AFI+      +RG +  N  P
Sbjct: 344 EMECPGALIRTRNSIRNGIAFILEGAGRAIRGANDNNDIP 383


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 216 PVPISAV-QIIGEVYGDKQTRRRWIYRHVVGRVVEELGAGVTLH 88
           P+ +S + QIIG +      R +W+Y  ++GR+   +G  + L+
Sbjct: 157 PLIVSCISQIIGHLLYSLAYRAQWLYLILIGRMCNGVGFTMFLY 200


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 326 EYNCSALRIRSLSTYSAGLAFIIFAIACCMRGL 228
           E  C    IR+ ++   G+AFI+  I   M GL
Sbjct: 273 EMECPGALIRTRNSIRNGIAFILGGIGNAMMGL 305


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 326 EYNCSALRIRSLSTYSAGLAFIIFAIACCMRGL 228
           E  C    IR+ ++   G+AFI+  I   M GL
Sbjct: 311 EMECPGALIRTRNSIRNGIAFILGGIGNAMMGL 343


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 162 FAYRHRPRL*SAQ---RLWELVPGMQTSH 239
           FA  H P+    Q   RL+E+VPG+ T H
Sbjct: 372 FALEHLPKDPMFQLVSRLYEIVPGVLTEH 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,165
Number of Sequences: 5004
Number of extensions: 25878
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)