Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F18
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 213 3e-56
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 213 3e-56
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 27 3.0
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884... 27 3.0
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710... 27 3.9
05_01_0282 - 2191263-2192462 27 5.2
12_01_0197 + 1456296-1456668,1456930-1458746 26 6.9
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 26 6.9
10_08_0163 + 15345712-15346167 26 6.9
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 26 6.9
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 26 9.1
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 9.1
10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910 26 9.1
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 26 9.1
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 26 9.1
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 213 bits (520), Expect = 3e-56
Identities = 91/113 (80%), Positives = 102/113 (90%)
Frame = +1
Query: 7 EDTMDNTTTQKYWLDIQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLA 186
+D D + KYW+D+QLRWGDYDSHD+ERY RAKF+DYTTDNMSIYPSPTG++I IDLA
Sbjct: 1664 KDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLA 1723
Query: 187 YNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEP 345
YNLHSA+GNWFPG KPL+QQAM KIMK+NPALYVLRERIRK LQLYSSEPTEP
Sbjct: 1724 YNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEP 1776
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 213 bits (520), Expect = 3e-56
Identities = 91/113 (80%), Positives = 102/113 (90%)
Frame = +1
Query: 7 EDTMDNTTTQKYWLDIQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLA 186
+D D + KYW+D+QLRWGDYDSHD+ERY RAKF+DYTTDNMSIYPSPTG++I IDLA
Sbjct: 1664 KDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLA 1723
Query: 187 YNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEP 345
YNLHSA+GNWFPG KPL+QQAM KIMK+NPALYVLRERIRK LQLYSSEPTEP
Sbjct: 1724 YNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEP 1776
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 27.5 bits (58), Expect = 3.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 142 STCCRSCSRGTWR 104
+T CRSC RG WR
Sbjct: 33 TTSCRSCGRGRWR 45
>02_02_0451 +
10387353-10387580,10387675-10387934,10388160-10388484,
10388819-10389061
Length = 351
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 235 LIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEP 345
++Q+ A ++ P+ Y+LRE+ R ++L ++E EP
Sbjct: 11 IVQELAAAGVEEPPSRYLLREKDRSDVKLVAAELPEP 47
>10_03_0016 -
7099862-7099967,7100059-7100357,7101862-7102171,
7104402-7105054,7105266-7105554,7106549-7106634
Length = 580
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 QLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDL-AYNLH 198
++RW Y HDV +A D T + ++ + L++ + + +N+H
Sbjct: 472 RVRWTSYTQHDVNDHAPHCLADLCTRDQELWRTTCHLVLDVHIEPHNVH 520
>05_01_0282 - 2191263-2192462
Length = 399
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 43 WLDIQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAID 180
W + WGD D H V A++ F+ D M + S +IA+D
Sbjct: 208 WSHRENGWGDEDDHTVHPDAKSAFV----DGMVNFISYNSAIIAVD 249
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 26.2 bits (55), Expect = 6.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 208 GNWFPGCKPLIQQA 249
GNW GCKP+++ A
Sbjct: 239 GNWTQGCKPIVEIA 252
>11_01_0191 +
1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 26.2 bits (55), Expect = 6.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 208 GNWFPGCKPLIQQA 249
GNW GCKP+++ A
Sbjct: 644 GNWTQGCKPIVEIA 657
>10_08_0163 + 15345712-15346167
Length = 151
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 130 DNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANP 276
D++ + P P G L A+DL N A + F P ++ + + + P
Sbjct: 103 DDLPVLPQPLGGLRALDLRSNSFFAITDGFFAAFPALETSTSTTTRCRP 151
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 130 DNMSIYPSPTGLLIAIDLAYNLH 198
D M + P +LIA+DLAY+ H
Sbjct: 298 DEMDVDAEPRIVLIALDLAYSSH 320
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1
Query: 204 SAVQIIGEVYGDKQTRRRWIYRHVVGRVVEELGAGVTL 91
+ + + ++ K+ RRRW + + GR++E G G+T+
Sbjct: 362 AVIAFLALLFLQKKWRRRWFFDNNGGRLLE--GMGITI 397
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 143 YIHRLRVCLSP*TSPIICTALMGTGSRDANLSYNK 247
Y+ C+ P S +CT LM R NLS N+
Sbjct: 252 YVMSEEACIKPDDSSGLCTLLMSGYLRAHNLSVNQ 286
>10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910
Length = 338
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 205 YGNWFPGCKPLIQQAMAKIMKANPAL 282
Y N P + ++QQ ++K + ANP L
Sbjct: 38 YDNSCPAAEIIVQQEVSKAVSANPGL 63
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 64 WGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNW 216
W D + + + + ++ + N S TG A+D+AY L + GN+
Sbjct: 293 WSDVEKEKLAKGIKQQYQEALILNSINKGSSTGDFSAVDMAYALTNTAGNF 343
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 204 SAVQIIGEVYGDKQTR--RRWIYRHVVGRVVEE 112
+++ +G YGDKQ + R W+ R VV + E
Sbjct: 478 ASIDALGSCYGDKQGKKYRAWVDRLVVSQCGSE 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,672,168
Number of Sequences: 37544
Number of extensions: 185864
Number of successful extensions: 502
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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