Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F18
(345 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 230 2e-61
Z81143-2|CAB03515.1| 340|Caenorhabditis elegans Hypothetical pr... 29 0.89
Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical pr... 27 2.7
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 27 2.7
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 27 2.7
AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein. 27 2.7
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 27 2.7
Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical pr... 27 3.6
AF040647-9|AAB94989.1| 336|Caenorhabditis elegans Hypothetical ... 27 4.8
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 26 8.3
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 26 8.3
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 26 8.3
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 26 8.3
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 26 8.3
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 230 bits (563), Expect = 2e-61
Identities = 103/113 (91%), Positives = 109/113 (96%)
Frame = +1
Query: 7 EDTMDNTTTQKYWLDIQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLA 186
+D MDNTTTQKYWLD+QLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTG+LIAIDLA
Sbjct: 1642 KDVMDNTTTQKYWLDVQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGVLIAIDLA 1701
Query: 187 YNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEP 345
YNL+SAYGNWFPG KPLI+QAMAKI+KANPA YVLRERIRK LQLYSSEPTEP
Sbjct: 1702 YNLYSAYGNWFPGMKPLIRQAMAKIIKANPAFYVLRERIRKGLQLYSSEPTEP 1754
>Z81143-2|CAB03515.1| 340|Caenorhabditis elegans Hypothetical
protein ZK265.3 protein.
Length = 340
Score = 29.1 bits (62), Expect = 0.89
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 91 ERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFP 222
E+Y ++ T ++ P PTGL + DL Y+L YG+ FP
Sbjct: 148 EKYEGGATANFMTIFRNLRPPPTGLKVYDDLWYDLR--YGDNFP 189
>Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical
protein F10B5.6 protein.
Length = 655
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 259 IMKANPALYVLRERIRKALQLYSSEP 336
+ + P + +LR+R+R+ QLY+ EP
Sbjct: 622 VSSSQPFMSMLRDRLRRQDQLYAQEP 647
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
isoform protein.
Length = 1187
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 264 EGQPGAVRTQRAYT*GTTVVLVRTD 338
EG PG V R Y+ G+T +L++ D
Sbjct: 918 EGPPGKVHNLRVYSVGSTAILLQWD 942
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 264 EGQPGAVRTQRAYT*GTTVVLVRTD 338
EG PG V R Y+ G+T +L++ D
Sbjct: 918 EGPPGKVHNLRVYSVGSTAILLQWD 942
>AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein.
Length = 655
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 259 IMKANPALYVLRERIRKALQLYSSEP 336
+ + P + +LR+R+R+ QLY+ EP
Sbjct: 622 VSSSQPFMSMLRDRLRRQDQLYAQEP 647
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 264 EGQPGAVRTQRAYT*GTTVVLVRTD 338
EG PG V R Y+ G+T +L++ D
Sbjct: 918 EGPPGKVHNLRVYSVGSTAILLQWD 942
>Z81500-4|CAB04097.1| 254|Caenorhabditis elegans Hypothetical
protein F11D11.5 protein.
Length = 254
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 228 ASREPVPISAVQIIGEVYGDKQTRRRWIYRH 136
AS + + S GE+Y K+T WIY++
Sbjct: 79 ASYKEIKFSVTSTNGEIYSWKKTDNGWIYKN 109
>AF040647-9|AAB94989.1| 336|Caenorhabditis elegans Hypothetical
protein F54D12.8 protein.
Length = 336
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 19 DNTTTQKYWLDIQLRWGD 72
DNTT Q +WL QLR D
Sbjct: 270 DNTTKQYFWLQPQLRLDD 287
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +1
Query: 73 YDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLH--SAYGNWFPGCKPLIQQ 246
+D+H++ A++ + T + PS + + Y + G W C P IQQ
Sbjct: 107 FDNHEISTAAQSHHIQRT-----VQPSKCSACDTLSILYTVQCIDCGGQWHKACFPRIQQ 161
Query: 247 AMAKIMK 267
+ K
Sbjct: 162 VCGQAAK 168
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +1
Query: 73 YDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLH--SAYGNWFPGCKPLIQQ 246
+D+H++ A++ + T + PS + + Y + G W C P IQQ
Sbjct: 336 FDNHEISTAAQSHHIQRT-----VQPSKCSACDTLSILYTVQCIDCGGQWHKACFPRIQQ 390
Query: 247 AMAKIMK 267
+ K
Sbjct: 391 VCGQAAK 397
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +1
Query: 73 YDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLH--SAYGNWFPGCKPLIQQ 246
+D+H++ A++ + T + PS + + Y + G W C P IQQ
Sbjct: 107 FDNHEISTAAQSHHIQRT-----VQPSKCSACDTLSILYTVQCIDCGGQWHKACFPRIQQ 161
Query: 247 AMAKIMK 267
+ K
Sbjct: 162 VCGQAAK 168
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +1
Query: 73 YDSHDVERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLH--SAYGNWFPGCKPLIQQ 246
+D+H++ A++ + T + PS + + Y + G W C P IQQ
Sbjct: 336 FDNHEISTAAQSHHIQRT-----VQPSKCSACDTLSILYTVQCIDCGGQWHKACFPRIQQ 390
Query: 247 AMAKIMK 267
+ K
Sbjct: 391 VCGQAAK 397
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 211 NWFPGCKPLIQQAMAKIMKANPA 279
N F CKPL++Q M K+ PA
Sbjct: 195 NAFDSCKPLLKQLMLDGPKSEPA 217
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 211 NWFPGCKPLIQQAMAKIMKANPA 279
N F CKPL++Q M K+ PA
Sbjct: 236 NAFDSCKPLLKQLMLDGPKSEPA 258
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 211 NWFPGCKPLIQQAMAKIMKANPA 279
N F CKPL++Q M K+ PA
Sbjct: 195 NAFDSCKPLLKQLMLDGPKSEPA 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,046,018
Number of Sequences: 27780
Number of extensions: 153741
Number of successful extensions: 437
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -