Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F18
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   9.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 43  WLDIQLRWGDYD 78
           W D QL+W + D
Sbjct: 83  WTDYQLQWDEAD 94


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 22  NTTTQKYWLDIQLRW 66
           N   ++ W D +LRW
Sbjct: 78  NLWVEQSWYDYKLRW 92


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 22  NTTTQKYWLDIQLRW 66
           N   ++ W D +LRW
Sbjct: 78  NLWVEQSWYDYKLRW 92


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 196 HSAYGNWFPGCKPLIQQ 246
           H  + +W P  +  IQQ
Sbjct: 470 HLVWNSWMPSIRGAIQQ 486


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 22  NTTTQKYWLDIQLRWGDYDSHDVE 93
           N   ++ W D +L+W   +   VE
Sbjct: 74  NLWVEQSWYDYKLKWDPKEYGGVE 97


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 22  NTTTQKYWLDIQLRWGDYDSHDVE 93
           N   ++ W D +L+W   D   V+
Sbjct: 70  NVWVEQEWNDYKLKWNPDDYGGVD 93


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +1

Query: 22  NTTTQKYWLDIQLRWGDYDSHDVE 93
           N   ++ W D +L+W   +   VE
Sbjct: 83  NVWVEQRWNDYKLKWNPEEYGGVE 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,329
Number of Sequences: 438
Number of extensions: 1978
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)