Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F17
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   1.8  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   3.1  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   9.5  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 160 DHLKYAKTSSYHDQ*ARFVSEGSHSAGN 77
           D L  + TSSYH +  R +SE S S+ N
Sbjct: 2   DSLSESSTSSYHGKRPRSLSEESQSSSN 29


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 175 YC*CVSTSSSS--PRTGTKQAGASSCYFLAYLQCHHVVDLH 291
           YC  ++T  S   PR  T  A  SS   L  +Q HH+ D+H
Sbjct: 293 YCIDLATKQSLQVPRLRTISALISSIQHLPLVQPHHMNDMH 333


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 201 FISQNRNEAS--RRVKLLLSCLSAMSPCG*FTLSKHRKFLLTLFNWISMGSSLGLWCNDL 374
           F+  N   A   R ++L+   L+    CG FT S  R     + +  + G    L C+DL
Sbjct: 437 FVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDL 496

Query: 375 LCR 383
           + R
Sbjct: 497 MAR 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,731
Number of Sequences: 5004
Number of extensions: 46520
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)