Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F17
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 29 1.8
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295... 29 2.4
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 28 4.2
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431... 28 5.5
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 27 7.3
07_03_1477 + 26826661-26827019,26827218-26827338,26827813-268279... 27 7.3
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 27 7.3
01_07_0311 + 42667114-42667132,42667336-42667367,42667449-426678... 27 7.3
>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/113 (25%), Positives = 46/113 (40%)
Frame = -2
Query: 406 VKPMKNTKRQSKSLHQRPSDEPIEIQLNRVSKNFLCFESVNQPHGDIADKQESNSLTRRL 227
V+P QS + H+ P DEP R SK F + A ++ SN + L
Sbjct: 803 VQPKDPAATQSGTNHETPQDEP------RPSKKRRVFIRSVSDYVKYAKREPSNGRSTSL 856
Query: 226 ASFLFWEMNSTSRHISNKE*LQDHLKYAKTSSYHDQ*ARFVSEGSHSAGNNAE 68
S + + +S + HI N D +SS + V + S S +N++
Sbjct: 857 LSTII-KKSSAASHILNSSLSADSKTSGFSSSGNKHKGSHVEDASKSPRSNSD 908
>04_04_0670 -
27128153-27129075,27129152-27129266,27129348-27129537,
27129652-27129786,27129874-27129971,27131075-27131764
Length = 716
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 280 PHGDIADKQESNSLTRRLASFLFW 209
PHGD KQ+ N T+ A FW
Sbjct: 256 PHGDAMAKQQVNGFTKYFAMSFFW 279
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 2 HEADLNDILLRVSAFGLFVYAVFCIIAGGMGAFTHEPSLL 121
H AD + +LL+ + FGL ++ C I+G + T++ ++L
Sbjct: 449 HGADFHMLLLQRAMFGLSLWMAMC-ISGSLNLLTNDRTVL 487
>03_01_0581 +
4310136-4310186,4310940-4311144,4311245-4311410,
4312035-4312257,4312891-4312967,4313091-4313278,
4313363-4313457,4313674-4313807,4313914-4314024,
4314304-4314619,4314919-4315040,4315183-4315293,
4315824-4316012,4316105-4316263,4316449-4316530,
4317080-4317190
Length = 779
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 88 SAGNNAENSVHEKSKCRNTKQDVVEI 11
S+GN+ E ++E+S N+ DVV I
Sbjct: 704 SSGNSCEEEIYERSSLINSPMDVVSI 729
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 174 LLLMCLDVEFISQNRNEASRRVKLLLSCLSAMSPCG*FTLSKHRKFLLTL 323
L+L CL I Q+ + + +K L +CL +P G F ++ K LL +
Sbjct: 1128 LMLKCLRYAEIPQHFAKKLKELKWLKTCLGFRAPPGTFLVNDDWKCLLNI 1177
>07_03_1477 +
26826661-26827019,26827218-26827338,26827813-26827962,
26828075-26828311
Length = 288
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 248 TFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVAWSLVQ 367
TF++ C +T+ L +TF + LA QL F GF+ ++Q
Sbjct: 106 TFIIFC-LTVALSWTFLRELFLACGAQLGFEGFMLSEVLQ 144
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 418 SDG*VKPMKNTKRQSKSLHQRPSDEPIEIQLNRVSKNFLCFESVNQPHGDIADKQESNS 242
SDG P++ TKR +K R DE ++ + N + K F + + G D Q N+
Sbjct: 683 SDGNAVPLEQTKRPTKGSQDR-HDE-LQKKANELEKLFAAQKLTSSRRGKSTDVQVENT 739
>01_07_0311 +
42667114-42667132,42667336-42667367,42667449-42667822,
42667895-42668028,42668147-42668303,42668994-42669098,
42669342-42669645,42670404-42670478,42671467-42672589,
42673686-42673727,42674017-42674111,42674199-42674239,
42674375-42674414
Length = 846
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 281 LIYTFEAQKVLANPVQLDFYGFVAW 355
+ + +A+ +LA PV+LD FVAW
Sbjct: 482 IFWESDARNILAIPVRLDTNDFVAW 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,121
Number of Sequences: 37544
Number of extensions: 299209
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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