Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F17
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    79   2e-15
U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical pr...    78   4e-15
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    71   7e-13
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    69   2e-12
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    65   4e-11
AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical ...    63   1e-10
Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical pr...    62   3e-10
AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical ...    62   3e-10
U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    43   1e-04
U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase ...    31   0.71 
AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threon...    31   0.71 
U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical pr...    30   0.94 
Z79759-6|CAB02135.3|  452|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    27   8.7  

>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 1/148 (0%)
 Frame = +2

Query: 14  LNDILLRVSAFGLFVYAVFCIIA-GGMGAFTHEPSLLVMITGCXXXXXXXXXXXFIADVS 190
           L+ ILL +   G  +Y+V  ++   G   +T+   +L+ +              F+  V+
Sbjct: 487 LDQILLSIGLVGELIYSVAGLVGLTGEKQWTNFSFILLFVH--IFRLIQVGTQTFLLHVA 544

Query: 191 RRRVHLPEQERSKPARQAVTFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVAWSLVQR 370
           R      E   ++P +QA+TFLL  N+ ++ +  FE++K   + + +++YG  +W  + R
Sbjct: 545 RSVRMGCEHREAQPGKQAITFLLTANLAIFFMNLFESEKAGVSEMIIEYYGKRSWVFLVR 604

Query: 371 FTLPLCIFHRFHSAVTLAEIWKTSYKAR 454
              PL IF+RFHS+V  AEIWK  Y A+
Sbjct: 605 SFSPLTIFYRFHSSVCFAEIWKNVYAAK 632


>U28737-6|AAL02486.1|  566|Caenorhabditis elegans Hypothetical
           protein F14B8.7 protein.
          Length = 566

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
 Frame = +2

Query: 14  LNDILLRVSAFGLFVYAVFCIIAGGMGAFTHEPSLLVMITGCXXXXXXXXXXXFIADVSR 193
           L+ ILL V   G  ++++  I++  +   T    L++  T              +   SR
Sbjct: 406 LDRILLVVGLIGELIFSIGGILSF-INNMTIGLPLIIFTTNVLRLIQVTFQSCLLMVASR 464

Query: 194 RRVHLPEQE--RSKPARQAVTFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVAWSLVQ 367
            R+    Q   R KP +Q +T LL+ N   +++  FEAQK   N   +  YG   W++V 
Sbjct: 465 LRIEESNQHMLRYKPGKQVITMLLMMNCAQFMMNVFEAQKAGINDEMIHMYGSYYWAIVV 524

Query: 368 RFTLPLCIFHRFHSAVTLAEIWKTSYK 448
           R   PL IF+RFHS+   AEIWK +++
Sbjct: 525 RGCSPLTIFYRFHSSACFAEIWKKTFR 551


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
 Frame = +2

Query: 2   HEADLNDILLRVSAFGLFVYAV--FCIIAGGMGAFTHEPSLLVMITGCXXXXXXXXXXXF 175
           H   +++ILL +   G  +Y    F +I  G    +H P+L + +              +
Sbjct: 454 HGEVIDEILLIIGLVGELIYCSIGFDMIVNGNRTGSHVPNLPIAVF-TFRIIQVIIQAMY 512

Query: 176 IADVSRRRVHLPEQERSKPARQAVTFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVAW 355
           I   SR R       R++P +Q +TFL++ N+T+++ +TFE  K          YGF A 
Sbjct: 513 ILIASRLRCLSEVNARTQPGKQTLTFLVLINITLFVYHTFEGMK--------STYGFPAL 564

Query: 356 SLVQRFTL-----PLCIFHRFHSAVTLAEIWKTSYKAR 454
              + F L     PL +F+RFHS+  LAEIWK +Y  +
Sbjct: 565 METKYFELLNISSPLVVFYRFHSSACLAEIWKHAYSTK 602


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
 Frame = +2

Query: 2   HEADLNDILLRVSAFGLFVYAVFCIIAGGMGAFTHEP-SLLVMITGCXXXXXXXXXXXFI 178
           H   +++ILL V   G  VY+   +          EP S + +++             FI
Sbjct: 389 HGEVIDEILLIVGLAGECVYSCAGMDLYINDKMIKEPASYITIVSFTLRITEVLVQTIFI 448

Query: 179 ADVSRRRVHLPEQERSKPARQAVTFLLICNVTMWLIYTFEAQKV-LANPVQLDFYGFVAW 355
              +R R +      ++P +Q +TFLL+CN+ +++ +TFE  ++    P++L      ++
Sbjct: 449 LIATRMRCYTQTNCYTEPGKQVITFLLVCNINLFIYHTFETTELNFGFPIKLP----DSY 504

Query: 356 SLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 454
           S +     P+ +F+RFHS+  LAEIWK +Y  +
Sbjct: 505 SAMLNIASPIVVFYRFHSSACLAEIWKHTYSRK 537


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
 Frame = +2

Query: 2   HEADLNDILLRVSAFGLFVYAVFCIIAGGMGAFTHEP--SLLVMITGCXXXXXXXXXXXF 175
           H   +++ILL V   G  VY    +     G   + P  S L ++              F
Sbjct: 415 HGQVVDEILLIVGLAGEIVYCSTGLDLYLNGRLENTPGTSCLTVVAFVMRIVQVVVQSVF 474

Query: 176 IADVSRRRVHLPEQERSKPARQAVTFLLICNVTMWLIYTFEA-QKVLANPVQLDFYGFVA 352
           I   SR R        ++P +Q VTFL++CN+ +++ +TFE  +     P ++       
Sbjct: 475 ILVASRLRSLSASNISNQPGKQIVTFLVVCNINLFIYHTFETIESNFGFPHKMSS----V 530

Query: 353 WSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 454
           +S +   + PL +F+RFHS+  LAEIWK +Y  +
Sbjct: 531 YSALLNISSPLVVFYRFHSSACLAEIWKHAYSKK 564


>AF016414-5|AAG24020.1|  585|Caenorhabditis elegans Hypothetical
           protein D1065.1 protein.
          Length = 585

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
 Frame = +2

Query: 2   HEADLNDILLRVSAFGLFVYAVFCIIAGGMGAFTHEP-SLLVMITGCXXXXXXXXXXXFI 178
           H   ++DILL V   G  VY+   I           P   + MI              FI
Sbjct: 418 HGEVIDDILLIVGLAGECVYSCAAIDLYVNEKLMDRPVPYITMIAFSLRITEVIVQTLFI 477

Query: 179 ADVSRRRVHLPEQERSKPARQAVTFLLICNVTMWLIYTFEA-QKVLANPVQLDFYGFVAW 355
              +R R         +P +Q +TFLLICN+ +++ +TFE  +     P ++       +
Sbjct: 478 LIAARMRSS--PLSNKQPGKQVITFLLICNINLFIYHTFETTESSFGFPAKVS----EVY 531

Query: 356 SLVQRFTLPLCIFHRFHSAVTLAEIWKTSY 445
           +++     P+ +F+RFHS+  LAEIWK +Y
Sbjct: 532 TVMLTIASPIVVFYRFHSSACLAEIWKNTY 561


>Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 32/94 (34%), Positives = 50/94 (53%)
 Frame = +2

Query: 173 FIADVSRRRVHLPEQERSKPARQAVTFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVA 352
           FI   SR R       + KP ++ +TFLL+ NVT+++ +TFE  K   +           
Sbjct: 491 FILTTSRLRCLSKYSMKYKPGKEIITFLLVSNVTLFVFHTFEGMK---SSFGFSSKAATQ 547

Query: 353 WSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 454
           ++ +     PL +F+RFHS+  LAEIWK +Y  +
Sbjct: 548 YNYIIYAVGPLLVFYRFHSSACLAEIWKHTYSTK 581


>AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 32/94 (34%), Positives = 50/94 (53%)
 Frame = +2

Query: 173 FIADVSRRRVHLPEQERSKPARQAVTFLLICNVTMWLIYTFEAQKVLANPVQLDFYGFVA 352
           FI   SR R       + KP ++ +TFLL+ NVT+++ +TFE  K   +           
Sbjct: 491 FILTTSRLRCLSKYSMKYKPGKEIITFLLVSNVTLFVFHTFEGMK---SSFGFSSKAATQ 547

Query: 353 WSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 454
           ++ +     PL +F+RFHS+  LAEIWK +Y  +
Sbjct: 548 YNYIIYAVGPLLVFYRFHSSACLAEIWKHTYSTK 581


>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +2

Query: 236 RQAVTFLLICNVTMWLIYTFEAQ-KVLANPVQLDFYGFVAWSLVQRFTLPLCIFHRFHSA 412
           +Q++TFL+  N+ ++  +  E   +    P ++D        +  +  LPL +F RFH +
Sbjct: 348 KQSITFLIALNMILFGFHAIEGSIRTYGFPTKIDDTS----KMFLKICLPLVVFFRFHCS 403

Query: 413 VTLAEIWKTSY 445
           V  AEIWK  Y
Sbjct: 404 VCFAEIWKVYY 414


>U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase
           protein 29 protein.
          Length = 822

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -3

Query: 120 SKLGS*VKAPIPPAIMQKTAYTKSPNAETRSKMSLRSAS 4
           ++LG  ++ PIP    Q+T YTK+P AE RS  +  S S
Sbjct: 569 NQLGGGIQNPIPR--YQRTPYTKAPPAERRSSWASPSLS 605


>AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threonine
           kinase KIN-29 protein.
          Length = 822

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -3

Query: 120 SKLGS*VKAPIPPAIMQKTAYTKSPNAETRSKMSLRSAS 4
           ++LG  ++ PIP    Q+T YTK+P AE RS  +  S S
Sbjct: 569 NQLGGGIQNPIPR--YQRTPYTKAPPAERRSSWASPSLS 605


>U88175-3|AAB42280.1|  295|Caenorhabditis elegans Hypothetical
           protein F21F3.3 protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 278 WLIYTFEAQKVLANPVQLDFYGFVAW 355
           W I+    Q VL NP+    Y FV W
Sbjct: 228 WFIWAVSTQIVLCNPISFVIYTFVTW 253


>Z79759-6|CAB02135.3|  452|Caenorhabditis elegans Hypothetical
           protein ZK858.7 protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 267 MSPCG*FTL-SKHRKFLLTLFNWISMGSSLGLWCNDLLCR 383
           ++P G   + S H+  L++ ++W+S   ++ L   D +CR
Sbjct: 369 LAPSGTIVIYSPHQNILISAYDWLSKRQTINLVLTDQMCR 408


>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 297 KHRKFLLTLFNWISMGSSLGLWCNDLLCRFVFFIGFTQPSL 419
           + R+  L    W ++G+SL    N +L  F  ++G  +PSL
Sbjct: 167 QRRQRKLAAIMWSAIGNSLRRLTNFVLFLFTAYVGIVKPSL 207


>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 344 FVAWSLVQRFTLPLCIFHRFHSAVTLAE 427
           F+A S V   TL L IFHR H++   +E
Sbjct: 202 FIAMSSVDIMTLILLIFHRKHTSFASSE 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,678
Number of Sequences: 27780
Number of extensions: 261849
Number of successful extensions: 666
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)