Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F17
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 20  DILLRVSAFGLFVYAVFCIIAGGMGAF 100
           ++ + +  F  ++  +FCI  GGM  F
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVF 442


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 20  DILLRVSAFGLFVYAVFCIIAGGMGAF 100
           ++ + +  F  ++  +FCI  GGM  F
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVF 495


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 385 LYFSSVSLSRHSC*NMEDQLQSSYRVNN 468
           LY+S++S    +  N E  ++S Y+ NN
Sbjct: 263 LYYSALSSHNLNYVNTEQFVKSQYQANN 290


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 385 KRQSKSLHQRPSDEPI 338
           +R  +++H RPS EPI
Sbjct: 19  RRHIQNVHTRPSKEPI 34


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +2

Query: 320 PVQLDFYGFVAWSLVQRFTLPLCIFHRF 403
           P  LDF+ F++++ +    +   + H F
Sbjct: 273 PTALDFFVFLSFAFIFATIIQFAVVHYF 300


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 78   IMQKTAYTKSPNAE 37
            I Q T YTK+ NAE
Sbjct: 1210 ITQYTVYTKADNAE 1223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,490
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)