Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F15
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    29   0.48 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   1.5  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    27   1.5  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   3.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   5.9  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 82  WSYVLDHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 201
           W+ +    H KS L+    ++   +N HN+R Q L K +V
Sbjct: 61  WAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 343 ENLYWYSTTDSTYKLNVDNAMESWFTEYKDYKYAPLKQSDFDKS 474
           +N YW  TTDS ++L V+N       E ++     L++ DF+K+
Sbjct: 356 KNTYWLYTTDSLHELVVNN-------ETREASLVFLEKGDFEKA 392


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 421 EYKDYKYAPLKQSDFDKSKPKIGHYTQMA 507
           EY + + APL QS +   +P+IG +  +A
Sbjct: 27  EYGEVETAPLSQSSWIYRRPRIGRFKSLA 55


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 445 PLKQSDFDKSKPKIGHYTQMACSES 519
           PL   +FDK   + GHYT + C  +
Sbjct: 28  PLLLKNFDKLLVRTGHYTPIPCGNN 52


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 160 GHNYRRQLLAKGQVSGHPAATE 225
           G N+RRQLL  G+  G  AA+E
Sbjct: 854 GDNWRRQLLENGKSFGLEAASE 875


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 470 LSKSLCFKGAYL*SLYSVNQLSIALSTFSLYVLSVVEYQ 354
           L  S+ F+G+     + +NQL+I L++ S Y  S + ++
Sbjct: 15  LRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFE 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,090
Number of Sequences: 5004
Number of extensions: 51027
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)