Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F15
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    27   0.099
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 0.099
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 476 LDLSKSLCFKGAYL*SLYSVNQLSIALSTFSLYVLSVVEYQYKF---SPVW 333
           LD+   + F G  + +L    + S+AL+ FSL + S++ Y  +    +P W
Sbjct: 290 LDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTW 340


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 133 MTSLVEIYYGRGPI 92
           +T+LVEI+ GRG I
Sbjct: 44  LTNLVEIFDGRGTI 57


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 382 CMCYRSLNTNTNFHQSGIFPIPKSCPGY 299
           C  YR L  N N+ +    P+P  C  +
Sbjct: 101 CNNYRKLYYNINYIEQIPIPVPIYCGNF 128


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 388 SVCMCYRSLNTNTNFHQSGIFPIPKSCP 305
           S   C   L      + +GI P+P  CP
Sbjct: 194 SALACAIMLGPRLGRYDNGIDPLPLGCP 221


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 416 NQLSIALSTFSLYVLSVVEYQYKFS 342
           N LSI  ST ++YVLS    Q  FS
Sbjct: 349 NDLSIDRSTNTMYVLSDNFQQLLFS 373


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -3

Query: 122 SRDLLWTWSNTYDHLPK 72
           +RD +W W    +++P+
Sbjct: 453 TRDSVWCWDTRKEYIPQ 469


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 520 WTQSMPSVCNGLF 482
           WT + P++C G+F
Sbjct: 495 WTITTPAICVGVF 507


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 520 WTQSMPSVCNGLF 482
           WT + P++C G+F
Sbjct: 548 WTITTPAICVGVF 560


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 112 YYGRGPIHTTICQN 71
           Y   GP H  +CQN
Sbjct: 186 YSETGPSHCVVCQN 199


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 106 GRGPIHTTICQNKKR 62
           G GPIH  +C N  R
Sbjct: 926 GFGPIHYGVCSNYLR 940


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,290
Number of Sequences: 438
Number of extensions: 3695
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)