Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F14
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    30   1.2  
09_06_0041 - 20440266-20441381                                         29   2.7  

>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -2

Query: 477 SVLKIIDSLESEQQKERHHKTEETHSLRQ 391
           +VLK   +++ E+QKE   +T+E HSL+Q
Sbjct: 210 AVLKRAVAIQHERQKEFDERTQEVHSLKQ 238


>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 335 PGTPPLNNSCSHMPS-WVSPCL 397
           PG PPLNNS    PS W+ P L
Sbjct: 349 PGAPPLNNSSLIRPSVWIFPSL 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,926,276
Number of Sequences: 37544
Number of extensions: 315086
Number of successful extensions: 872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)