Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F14
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    79   2e-15
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    79   2e-15
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    79   2e-15
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    30   1.1  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U23168-12|AAC38812.2|  443|Caenorhabditis elegans Hypothetical p...    27   9.9  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 190 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 369
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 370 YAILGFALSE 399
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 190 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 369
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 370 YAILGFALSE 399
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 190 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 369
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 370 YAILGFALSE 399
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 180 SRCNWNNLCVCRHCCEWGRTKSCVAEDSSPAAGRSILRI 64
           + CNWNN   C  C ++   + C A++    A  ++LRI
Sbjct: 457 AECNWNNRYKCTICADYDLCRQCEAKNLH--ANHAMLRI 493


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +1

Query: 28  VSRRTPQNTKMLYAQD*SPCSRTAIFSNTALGATPLAAVPTHTQIVPVAPAQLSAVRTFQ 207
           V  + P NTK     D S    T + ++T +  TP     T T   P      +A  +  
Sbjct: 317 VKAKDPANTKSSAHLDNSDVPTTTVQTSTTVPTTPSKTTAT-TTTTPKPTTTETATTSSS 375

Query: 208 TTSVT 222
           TT+VT
Sbjct: 376 TTTVT 380


>U23168-12|AAC38812.2|  443|Caenorhabditis elegans Hypothetical
           protein B0228.9 protein.
          Length = 443

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 470 RTLQLPSY--IMRFQCYYYLEWTAVESNVWKPHPLVMLGL 583
           R+L +P +  ++ F   YY   T V S+ W  HP  + G+
Sbjct: 63  RSLSVPEFQHVLTFISGYYQHLTEVRSDRWTDHPNYINGI 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,228,663
Number of Sequences: 27780
Number of extensions: 258041
Number of successful extensions: 768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)