Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F13
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 28 0.63
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 28 0.83
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 27 1.9
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 27 1.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 2.5
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 4.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.9
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 25 5.9
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 7.8
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 7.8
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 0.63
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 238 ISEVEVSGQRSSTLARQYGGYPERYTNGRGKHLVEELP 125
+ E+ + S L + YPER+TN + L+E LP
Sbjct: 332 VKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLP 369
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.9 bits (59), Expect = 0.83
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 393 QSCFIIIFIVINSGSNYMK-YLIR*LCTFC 307
++ F ++ I+ + SNY++ YL+R LCT C
Sbjct: 596 RAVFELLEIIQMASSNYLRLYLLRGLCTLC 625
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 235 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNY 381
KS+ G++ P +VA + R +E E F + YY +NY
Sbjct: 1202 KSIFTESMAGSSLPVVVAHGEGRAVFDSESDYEQFKKEGLDLIYYVNNY 1250
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 1.9
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 1/151 (0%)
Frame = +1
Query: 13 HVSNKMLMNFSMLEMHFMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIV 192
H+ K+ ++ E+H + + + EA+ I P+S + QR + Y S +
Sbjct: 234 HIMTKIFYVYASHELHQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRDFD-EAESL 292
Query: 193 LQELKTADPI-LQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYY 369
+ + T DP L + + + L NK + A+VA + + Y
Sbjct: 293 FENILTNDPYRLDDMDTYSNVLFVLENKSKL--GFLAQVASSIDKFRPETCSIIGNYYSL 350
Query: 370 EDNYEAALTIFHDIELVELRAYSIQLPVGHE 462
+E A+T F + S +GHE
Sbjct: 351 LSEHEKAVTYFKRALQLNRNYLSAWTLMGHE 381
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 2.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 73 ITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD 216
+T Q IN+ R+ S +L R + S IA G HRI TAD
Sbjct: 781 VTCQKINDKDRVRFSGQSSSLFRWSATF-SNIADGIHRISFNNASTAD 827
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 238 ISEVEVSGQRSSTLARQYGGYPERYTNGRGK--HLVEELP 125
+ EV RSS LA + GYP YT + H + ELP
Sbjct: 373 VIEVNARLSRSSALASKATGYPLAYTAAKIALGHTLPELP 412
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 4.5
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Frame = +1
Query: 115 SSPLVALQRDVFLYRSYIAQGN--HRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVA 288
SS L+ L R FL R+Y N H+++ + + PLK L + + +P +
Sbjct: 420 SSSLLILGRYPFLLRAYPELSNLYHKLLHISISSIYANYSPLKLLPNDVRERLKQPKFIP 479
Query: 289 DIDARVAKGT----ELSNEVFHV---------VAATIYYYEDNYEAALTIFHDIELVELR 429
+ D+R+ + T + N VF + + ++YY +NY+ + I + L E
Sbjct: 480 E-DSRLREITLRPPKEKNLVFSLDPFADRFNKTESEVFYYFENYDEDIPILRN--LTEF- 535
Query: 430 AYSIQLP 450
Y+I +P
Sbjct: 536 -YNIAIP 541
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTA 213
++R FLY ++ +H ++ QEL+ A
Sbjct: 346 IKRVAFLYHKFMIPSDHVVISQELQDA 372
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 130 ALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVADID 297
A++ V LYR +++ R +K A L K D + PG + D++
Sbjct: 15 AVRSTVSLYRGFVSASIRRNEQNVVKAAAQELANAKEPSDLIGPGGRDGEVPTDLE 70
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 307 AKGTELSNEVFHVVAATIYYYEDNYEAALTIF 402
A G E NE F + A + YE A TIF
Sbjct: 233 ALGQEFLNERFFIAFAKFEIRQKEYERARTIF 264
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 433 MLSAPLIQYRGKLSKLLH 380
ML P +QY GKLS+ L+
Sbjct: 1 MLGKPALQYFGKLSRYLY 18
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,523
Number of Sequences: 5004
Number of extensions: 40589
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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