Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F13
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 62 2e-10
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 59 2e-09
02_02_0082 + 6615408-6615606,6615736-6615866,6615957-6616072,661... 29 1.9
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 28 3.3
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 27 5.8
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253... 27 5.8
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 27 7.7
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 27 7.7
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 62.1 bits (144), Expect = 2e-10
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Frame = +1
Query: 118 SPLVALQRDVFLYRSYIAQGNHRIVLQEL-KTADPILQPLKSLVDYLSPGA-NKPAIVAD 291
SP +RD LYRSYIA G+H++V+ E+ A LQ ++ L YLS GA K + +
Sbjct: 39 SPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRK 98
Query: 292 IDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIELVELRAYSIQL 447
++ +A SN + +VA T+ +E +Y AL + +EL A ++Q+
Sbjct: 99 LNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQI 150
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 58.8 bits (136), Expect = 2e-09
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQEL-KTADPILQPLK 237
F L Q AIN + + A +RD ++RSY+A G++++V+ E+ +A LQ +K
Sbjct: 14 FYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVK 72
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
L YLS +K + + + ++ SN V ++A I+ +E +Y AL H
Sbjct: 73 LLALYLS--GDKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGT 130
Query: 418 VELRAYSIQL 447
++L A ++Q+
Sbjct: 131 LDLHALNVQI 140
>02_02_0082 +
6615408-6615606,6615736-6615866,6615957-6616072,
6617109-6617230,6617353-6617645,6617774-6617875,
6620437-6620865,6621026-6621775,6621915-6622109
Length = 778
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 343 VVAATIYYYEDNYEAALTIFHDIELVELRAYSIQLPVGHEPSG 471
++A T+YY + Y+ T+ +L L +Q+ G P+G
Sbjct: 583 IIAGTLYYMDPEYQQTGTVRPKSDLFGLGVIILQMLTGKRPNG 625
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 235 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTI 399
KSL++ G+ P + ID R+ E HVV A YY EA +I
Sbjct: 321 KSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSI 375
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 106 INPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANK 273
I PSS + ++ D+F + N+ + +Q+L + I P + LS G N+
Sbjct: 188 IKPSSTWLNVEHDIFYREHGLNMTNYILSIQKLGSVKYISSPELGFLQSLSGGINR 243
>06_03_0540 -
21923763-21923945,21924027-21924776,21924895-21925323,
21925509-21925619,21925715-21926040,21926130-21926251,
21926905-21927020,21927119-21927243,21927338-21927596
Length = 806
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 346 VAATIYYYEDNYEAALTIFHDIELVELRAYSIQLPVGHEPSG 471
VA T+YY + Y+ TI ++ L +QL G P G
Sbjct: 616 VAGTLYYMDPEYQLTGTIRPKSDVYALGIIILQLLTGKRPHG 657
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 142 DVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGT 318
++ L S++A+ +++ +KT PIL ++++D+ SP K V + + + T
Sbjct: 110 NIVLSNSWVAKRIQDMLVNGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHLRSTIIGDT 168
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +1
Query: 4 RGWHVSNKMLMNFSMLEMHFMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNH 183
+G HVSN+ +++F+ L F E+T +N A+ +N + Y +++
Sbjct: 348 KGGHVSNEEILSFAKL---FNDELTLDNMNRARLVNMCKYMGIQPFGTDHYLTFML---- 400
Query: 184 RIVLQELKTADPILQ 228
R LQE+K D ++Q
Sbjct: 401 RKKLQEIKNDDKMIQ 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,960
Number of Sequences: 37544
Number of extensions: 238785
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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