Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F13
(473 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein. 101 1e-21
BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein comple... 101 1e-21
BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein comple... 101 1e-21
BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein comple... 101 1e-21
AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of coat... 101 1e-21
AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein pro... 101 1e-21
AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein. 101 2e-21
AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein. 97 3e-20
AC002985-1|AAB81543.1| 147|Homo sapiens epsilon-COP protein. 97 3e-20
AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein. 61 2e-09
X89713-1|CAA61857.1| 907|Homo sapiens death associated protein ... 30 3.6
U76111-1|AAC51166.1| 907|Homo sapiens translation repressor NAT... 30 3.6
U73824-1|AAB49973.1| 907|Homo sapiens p97 protein. 30 3.6
BC111548-1|AAI11549.2| 869|Homo sapiens eukaryotic translation ... 30 3.6
BC111415-1|AAI11416.1| 907|Homo sapiens eukaryotic translation ... 30 3.6
BC065276-1|AAH65276.1| 701|Homo sapiens EIF4G2 protein protein. 30 3.6
BC043149-1|AAH43149.2| 907|Homo sapiens eukaryotic translation ... 30 3.6
BC039851-1|AAH39851.1| 907|Homo sapiens eukaryotic translation ... 30 3.6
BC018975-1|AAH18975.1| 907|Homo sapiens eukaryotic translation ... 30 3.6
BC018746-1|AAH18746.1| 907|Homo sapiens eukaryotic translation ... 30 3.6
BC014930-1|AAH14930.2| 352|Homo sapiens EIF4G2 protein protein. 30 3.6
AY513274-1|AAT08027.1| 701|Homo sapiens aging-associated protei... 30 3.6
AK223548-1|BAD97268.1| 907|Homo sapiens eukaryotic translation ... 30 3.6
AB209267-1|BAD92504.1| 940|Homo sapiens eukaryotic translation ... 30 3.6
>CR456886-1|CAG33167.1| 308|Homo sapiens COPE protein.
Length = 308
Score = 101 bits (243), Expect = 1e-21
Identities = 50/130 (38%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 146 LECTAMTVQI 155
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>BC017285-1|AAH17285.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 101 bits (243), Expect = 1e-21
Identities = 50/130 (38%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 146 LECTAMTVQI 155
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>BC007250-1|AAH07250.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 101 bits (243), Expect = 1e-21
Identities = 50/130 (38%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 146 LECTAMTVQI 155
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>BC003155-1|AAH03155.1| 308|Homo sapiens coatomer protein complex,
subunit epsilon protein.
Length = 308
Score = 101 bits (243), Expect = 1e-21
Identities = 50/130 (38%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 146 LECTAMTVQI 155
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>AK222584-1|BAD96304.1| 308|Homo sapiens epsilon subunit of
coatomer protein complex isoform a variant protein.
Length = 308
Score = 101 bits (243), Expect = 1e-21
Identities = 50/130 (38%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 146 LECTAMTVQI 155
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>AJ249366-1|CAB55628.1| 308|Homo sapiens epsilon-COP protein
protein.
Length = 308
Score = 101 bits (243), Expect = 1e-21
Identities = 50/130 (38%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 146 LECTAMTVQI 155
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>AJ131182-1|CAA10316.1| 308|Homo sapiens Epsilon COP protein.
Length = 308
Score = 101 bits (241), Expect = 2e-21
Identities = 50/130 (38%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNITFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 146 LECTAMTVQI 155
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>AF092438-1|AAP97213.1| 307|Homo sapiens epsilon-COP protein.
Length = 307
Score = 97.1 bits (231), Expect = 3e-20
Identities = 48/130 (36%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTAD-PILQPLK 237
F + QQ INEA + SSP ++RDVFLYR+Y+AQ +VL E+K + P LQ ++
Sbjct: 25 FYIGSYQQCINEAHGVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 84
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 85 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 144
Query: 418 VELRAYSIQL 447
+E A ++Q+
Sbjct: 145 LECTAMTVQI 154
Score = 36.3 bits (80), Expect = 0.054
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 15 RQQQDVDELFDVRNAFYVGNY 77
R +VDELFDV+NAFY+G+Y
Sbjct: 10 RGSGEVDELFDVKNAFYIGSY 30
>AC002985-1|AAB81543.1| 147|Homo sapiens epsilon-COP protein.
Length = 147
Score = 97.1 bits (231), Expect = 3e-20
Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Frame = +1
Query: 61 FMLEITQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELK-TADPILQPLK 237
F + QQ INEAQR+ SSP ++RDVFLYR+Y+AQ +VL E+K ++ P LQ ++
Sbjct: 26 FYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVR 85
Query: 238 SLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALTIFHDIEL 417
DYL+ + + +IVA++D +++ +++N F ++AA+IY ++ N +AAL H +
Sbjct: 86 MFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDS 145
Query: 418 VE 423
+E
Sbjct: 146 LE 147
Score = 35.9 bits (79), Expect = 0.072
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +3
Query: 27 DVDELFDVRNAFYVGNY 77
+VDELFDV+NAFY+G+Y
Sbjct: 15 EVDELFDVKNAFYIGSY 31
>AC005197-2|AAC24612.1| 245|Homo sapiens COPE_HUMAN protein.
Length = 245
Score = 61.3 bits (142), Expect = 2e-09
Identities = 28/88 (31%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +1
Query: 187 IVLQELKTAD-PILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIY 363
+VL E+K + P LQ ++ DYL+ + + +IVA++D +++ +++N F ++AA+IY
Sbjct: 5 VVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIY 64
Query: 364 YYEDNYEAALTIFHDIELVELRAYSIQL 447
++ N +AAL H + +E A ++Q+
Sbjct: 65 LHDQNPDAALRALHQGDSLECTAMTVQI 92
>X89713-1|CAA61857.1| 907|Homo sapiens death associated protein 5
protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>U76111-1|AAC51166.1| 907|Homo sapiens translation repressor NAT1
protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>U73824-1|AAB49973.1| 907|Homo sapiens p97 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>BC111548-1|AAI11549.2| 869|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 protein.
Length = 869
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 594 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 629
>BC111415-1|AAI11416.1| 907|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>BC065276-1|AAH65276.1| 701|Homo sapiens EIF4G2 protein protein.
Length = 701
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 426 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 461
>BC043149-1|AAH43149.2| 907|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>BC039851-1|AAH39851.1| 907|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>BC018975-1|AAH18975.1| 907|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>BC018746-1|AAH18746.1| 907|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>BC014930-1|AAH14930.2| 352|Homo sapiens EIF4G2 protein protein.
Length = 352
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 77 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 112
>AY513274-1|AAT08027.1| 701|Homo sapiens aging-associated protein 1
protein.
Length = 701
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 426 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 461
>AK223548-1|BAD97268.1| 907|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 variant protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 632 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 667
>AB209267-1|BAD92504.1| 940|Homo sapiens eukaryotic translation
initiation factor 4 gamma, 2 variant protein.
Length = 940
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 133 LQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKS 240
L+ D+ L +SY+AQ R ++ EL + + QPL+S
Sbjct: 665 LEVDIPLVKSYLAQFAARAIISELVSISELAQPLES 700
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,570,768
Number of Sequences: 237096
Number of extensions: 1449793
Number of successful extensions: 6183
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6174
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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