Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F10
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 38 0.004
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 38 0.005
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 31 0.47
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 3.3
10_02_0150 - 5883942-5884328,5884573-5884677,5885219-5885311,588... 28 4.4
08_01_1029 - 10419090-10419476,10419721-10419822,10420367-104204... 28 4.4
06_03_1065 - 27316270-27317032,27317062-27317189 28 4.4
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 28 4.4
05_01_0264 + 2030080-2031270 28 5.8
02_05_0883 - 32481502-32483085 27 7.6
01_06_0250 + 27876358-27879261 27 7.6
01_02_0051 - 10655867-10657057 27 7.6
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 353 NLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLIKHVTMRG 511
N+ SY Y +YF+ + GF+K F++ SDE + A L+K+ MRG
Sbjct: 100 NVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRG 152
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 371 SYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLIKHVTMRG 511
SY Y +YF+ + GF+K F++ SDE + A LIK+ MRG
Sbjct: 138 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRG 184
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 338 LQAYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEA-WEKAIDLIKHVTMRGI 514
L AYA ++L +++ AG+S + R D W+KA DLI + G+
Sbjct: 163 LNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGV 222
Query: 515 NMD 523
+D
Sbjct: 223 ELD 225
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 368 RSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 487
R Y L YF+ N+ + + ++DE W K +D+
Sbjct: 476 RHMRYRLKKKYFDGVPANQVRTTSPLKCMTDEQWTKLVDM 515
>10_02_0150 -
5883942-5884328,5884573-5884677,5885219-5885311,
5885394-5885606,5886976-5887005
Length = 275
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 365 KRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 487
+R Y L YFN N + ++D W++ +D+
Sbjct: 34 QRQMRYRLKKKYFNGIPANEVRTTSPLSSMTDNEWKQLVDM 74
>08_01_1029 -
10419090-10419476,10419721-10419822,10420367-10420459,
10420542-10420754,10421625-10421654
Length = 274
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 365 KRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 487
+R Y L YFN N + ++D W++ +D+
Sbjct: 34 QRQMRYRLKKKYFNGIPANEVRTTSPLSSMTDNEWKQLVDM 74
>06_03_1065 - 27316270-27317032,27317062-27317189
Length = 296
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 295 AIRRIQ*LQPRRWRTSGLRQPLPQAVIRISAICFIFQQLQN 417
A RR + + RRWR G+ Q LP A + + CF ++ Q+
Sbjct: 66 AARRRRRRRQRRWRHQGVAQLLPGAPVDHALPCFRGEERQS 106
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 32 VLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMKKITFAVAC 190
+L S SL K+ V ++ +S +V LI S +LG + T+AV C
Sbjct: 262 LLKSSGLKSLFVKASGVSVSIQVDVSNTKVDYLINSACEKLGVKAQDTYAVLC 314
>05_01_0264 + 2030080-2031270
Length = 396
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 550 RIVNATSGEVHVDTSHCDVLN*IDRLLPSFIG*LPEHFTK 431
R + S +V +D HC VL I++ P + HFTK
Sbjct: 77 RNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTK 116
>02_05_0883 - 32481502-32483085
Length = 527
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 56 SLCWKSPSAPVCVKAALST-VRVINLIPSIHNRLGT 160
S C SPS+P+ + ALS RV+ L PS H L T
Sbjct: 109 SACADSPSSPLARRLALSVHARVLKLFPS-HLLLST 143
>01_06_0250 + 27876358-27879261
Length = 967
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +2
Query: 305 EYNDYSHVAGELQAYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAID 484
EY + H GE+ ++ + LL+ SY +Y++ R+ SK RK S + +
Sbjct: 508 EYMFFRHAMGEMNKSRTTVVRMDHSQLLNVSYDISYRV-RSANSKA-RKNSSSLFSHPLS 565
Query: 485 LIKHVTMRGINMDFSRRSIYDPE 553
+ + + S +YDP+
Sbjct: 566 IERR--------EISAEGVYDPK 580
>01_02_0051 - 10655867-10657057
Length = 396
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 550 RIVNATSGEVHVDTSHCDVLN*IDRLLPSFIG*LPEHFTK 431
R + S +V +D HC VL I++ P + HFTK
Sbjct: 77 RGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTK 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,413
Number of Sequences: 37544
Number of extensions: 259384
Number of successful extensions: 731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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