Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F08
         (416 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   3.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.4  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   6.4  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   8.4  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 407 HNYLHSNK*WQQLHEIP 357
           HNY H+N+ +  + E P
Sbjct: 37  HNYTHNNEMYHSVKEEP 53


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 79  CPFMLEITKQAINEAQRIKSFISLG 153
           CP + +  K  +N ++   S +SLG
Sbjct: 845 CPNLYDARKPYVNGSEYHPSIVSLG 869


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 299 PAIVADIDARVAKGTELSNEVFHVVAATI 385
           PA+V D   R+    ELS E+     AT+
Sbjct: 140 PAVVLDYFERLGANQELSLELITRKLATL 168


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 162 NEMFSSTVRISLRVTTVLSCK 224
           NE+ SS +++S     + +CK
Sbjct: 338 NEVISSALKLSQNELEITACK 358


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,323
Number of Sequences: 336
Number of extensions: 2177
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)