Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F08
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 29 0.22
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 27 0.88
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 27 1.5
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 26 2.0
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.0
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 26 2.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 3.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 4.7
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe... 25 4.7
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 6.2
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 24 8.2
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 29.5 bits (63), Expect = 0.22
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 263 ISEVEVSGQRSSTLARQYGGYPERYTNGRGKHLVEELPREMKDLMRC 123
+ E+ + S L + YPER+TN + L+E LP + C
Sbjct: 332 VKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSC 378
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.5 bits (58), Expect = 0.88
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 409 FIIIFIVINSGSNYMK-YLIR*LCTFC 332
F ++ I+ + SNY++ YL+R LCT C
Sbjct: 599 FELLEIIQMASSNYLRLYLLRGLCTLC 625
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 1.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 260 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNY 406
KS+ G++ P +VA + R +E E F + YY +NY
Sbjct: 1202 KSIFTESMAGSSLPVVVAHGEGRAVFDSESDYEQFKKEGLDLIYYVNNY 1250
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 2.0
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 122 HNALNPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKP 301
++ L S A++ V LYR +++ R +K A L K D + PG
Sbjct: 4 NSMLRVSRQRAAVRSTVSLYRGFVSASIRRNEQNVVKAAAQELANAKEPSDLIGPGGRDG 63
Query: 302 AIVADID 322
+ D++
Sbjct: 64 EVPTDLE 70
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 2.0
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 263 ISEVEVSGQRSSTLARQYGGYPERYTNGRGK--HLVEELP 150
+ EV RSS LA + GYP YT + H + ELP
Sbjct: 373 VIEVNARLSRSSALASKATGYPLAYTAAKIALGHTLPELP 412
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 152 PREMKDLMRCASLIACLVISNIKGQFF*TIPKKFQFNNSWLADPRAEIP 6
P EM+DL +C N++ + PK Q WL RAE+P
Sbjct: 29 PAEMRDLAKCNDQF----FRNVRDTI--SEPKFTQLMELWLEKSRAEVP 71
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 3.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 2 LQEFRHEGQPTKNC*IETFSELFRKIALLCWKLPNKLLTRHN 127
L+ +G+ ++N I T +LF K PNKLLT H+
Sbjct: 13 LKSTSKKGEKSRN--IITIQDLFSKREAQLTDTPNKLLTDHD 52
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 158 LQRDVFLYRSYIAQGNHRIVLQELKTA 238
++R FLY ++ +H ++ QEL+ A
Sbjct: 346 IKRVAFLYHKFMIPSDHVVISQELQDA 372
>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 248
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 97 ITKQAINEAQRIKSFISLGSSSTRCFPLPFV 189
I+ ++ QR+ SF +L S CFP+ ++
Sbjct: 134 ISASCVHSPQRLISFFNLFSIPAYCFPIIYL 164
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 24.6 bits (51), Expect = 6.2
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 92 WKLPNKLLTRHNALNPSSPLVALQRDVFLY--RSYIAQGNHRIVLQELKT 235
WKLP + +A+N +VAL +Y S +G QE KT
Sbjct: 561 WKLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKT 610
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 58 KSFNSTILGWLTLV 17
K+F S ILGWL LV
Sbjct: 299 KTFMSNILGWLDLV 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,895
Number of Sequences: 5004
Number of extensions: 36535
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -