Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F08
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 56 9e-09
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 49 1e-06
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 28 3.5
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 27 4.6
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 27 6.0
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 27 8.0
03_02_0215 + 6505231-6505554,6506786-6507682 27 8.0
01_01_0406 + 3059996-3060047,3060804-3060867,3060979-3061054,306... 27 8.0
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 56.4 bits (130), Expect = 9e-09
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Frame = +2
Query: 143 SPLVALQRDVFLYRSYIAQGNHRIVLQEL-KTADPILQPLKSLVDYLSPGA-NKPAIVAD 316
SP +RD LYRSYIA G+H++V+ E+ A LQ ++ L YLS GA K + +
Sbjct: 39 SPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRK 98
Query: 317 IDARVAKGTELSNEVFHVVAATIYYYEDNYEAA 415
++ +A SN + +VA T+ +E +Y A
Sbjct: 99 LNELLADDAVGSNPILRLVAGTVLMHERDYAGA 131
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 49.2 bits (112), Expect = 1e-06
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 155 ALQRDVFLYRSYIAQGNHRIVLQEL-KTADPILQPLKSLVDYLSPGANKPAIVADIDARV 331
A +RD ++RSY+A G++++V+ E+ +A LQ +K L YLS +K + + + +
Sbjct: 36 AAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVKLLALYLS--GDKESAIVSLKEWL 93
Query: 332 AKGTELSNEVFHVVAATIYYYEDNYEAA 415
+ SN V ++A I+ +E +Y A
Sbjct: 94 SDSAVGSNPVLRLIAGIIFMHEQDYTEA 121
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 200 PERYTNGRGKHLVEELPREMKDLMRCASLIACLV 99
P+R NG G +VE +P + + RCA ++ V
Sbjct: 65 PQRLGNGGGLPVVEPIPLPVSRIARCAEPVSAQV 98
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 260 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEA 412
KSL++ G+ P + ID R+ E HVV A YY EA
Sbjct: 321 KSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEA 371
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 167 DVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGT 343
++ L S++A+ +++ +KT PIL ++++D+ SP K V + + + T
Sbjct: 110 NIVLSNSWVAKRIQDMLVNGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHLRSTIIGDT 168
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 131 LNPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANK 298
+ PSS + ++ D+F + N+ + +Q+L + I P + LS G N+
Sbjct: 188 IKPSSTWLNVEHDIFYREHGLNMTNYILSIQKLGSVKYISSPELGFLQSLSGGINR 243
>03_02_0215 + 6505231-6505554,6506786-6507682
Length = 406
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 221 ARQYGGYPERYTNGRGKHLVEELP 150
A + G ++ T+GRG H+VE LP
Sbjct: 263 ALEQGPVTDQETSGRGAHIVEYLP 286
>01_01_0406 +
3059996-3060047,3060804-3060867,3060979-3061054,
3061142-3061243,3061327-3061542,3061615-3061695,
3062219-3062287,3062789-3062961,3063098-3063182,
3063290-3063491,3063577-3063646,3063956-3064025,
3064138-3064227,3064321-3064389,3064566-3064664,
3064814-3064924
Length = 542
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 167 DVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGT 343
++ L ++IAQ +++ +KT PIL ++++D+ SP K V I + + T
Sbjct: 88 NITLSSNWIAQRIQDMLVCGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHIRSTIIGDT 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,006
Number of Sequences: 37544
Number of extensions: 211722
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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