Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F08
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z54236-6|CAA90981.3| 465|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 27 5.5
U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical ... 27 5.5
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 26 9.5
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 26 9.5
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 26 9.5
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 26 9.5
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 26 9.5
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 26 9.5
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 26 9.5
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 26 9.5
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 46.0 bits (104), Expect = 1e-05
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +2
Query: 161 QRDVFLYRSYIAQGNHRIVLQEL--KTADPILQPLKSLVDYLSPGANKPAIVADIDARVA 334
++DV+LYRSYIAQG I L+E+ T L ++ ++ + A K I+A++ VA
Sbjct: 37 EKDVYLYRSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVA 96
Query: 335 KGTELSNEVFHVVAATI 385
+ +E+ V+AATI
Sbjct: 97 -SRNIKSEIAAVLAATI 112
>Z54236-6|CAA90981.3| 465|Caenorhabditis elegans Hypothetical
protein C27B7.6 protein.
Length = 465
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 215 VLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEV 361
+L+ LKT IL+PL L++ ++P + DI ++ + +NEV
Sbjct: 36 ILEVLKTIKEILEPLPCLIEIIAP----VVVFGDIHGQLGDLLQFTNEV 80
>Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical
protein M88.1 protein.
Length = 531
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 409 FIIIFIVINSGSNYMKYLIR*LCTFC 332
FI+IFIV G +M+ +IR C FC
Sbjct: 498 FIVIFIVFYIGYRFMRAVIR--CCFC 521
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -1
Query: 293 LLQEINNLLGISEVEVSGQRSSTLARQYGGYPERYTNGRGKHLVEELPREMKDLMRCASL 114
+++E+ + G + Q S RQ GG ER + H+V + + + CA
Sbjct: 232 IIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPDIHIVAKPQQRWRSPTICAET 291
Query: 113 IA 108
+A
Sbjct: 292 LA 293
>U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical
protein T25B6.2 protein.
Length = 798
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 125 NALNPSSPLVALQRDVFLYRSYIAQGNHRIV-LQELKTA 238
NAL P ++L RD ++ YIA+ N R+ + +L TA
Sbjct: 222 NALYTGPPGLSLARDFYVKPQYIAEVNQRVSDVNDLLTA 260
>AF040654-2|AAK21449.2| 1014|Caenorhabditis elegans Hypothetical
protein R06B10.2 protein.
Length = 1014
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 104 NKLLTRHNALNPSSPLVALQRDVFLYRSYIAQGNHRIV 217
NKL T + P +P+++ ++FL RS N +I+
Sbjct: 211 NKLNTLAEKIKPEAPMISQLHELFLSRSLKKSVNFKII 248
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 344 ELSNEVFHVVAATIYYYEDNYEAA 415
E +NE+F ++A+ I Y DN+ A+
Sbjct: 118 EDANELFRLIASCIIYSNDNWRAS 141
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 344 ELSNEVFHVVAATIYYYEDNYEAA 415
E +NE+F ++A+ I Y DN+ A+
Sbjct: 118 EDANELFRLIASCIIYSNDNWRAS 141
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 412 CFIIIFIVINSGSNYM 365
CF+IIF+VIN+ N M
Sbjct: 403 CFVIIFVVINAIGNAM 418
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 412 CFIIIFIVINSGSNYM 365
CF+IIF+VIN+ N M
Sbjct: 403 CFVIIFVVINAIGNAM 418
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 412 CFIIIFIVINSGSNYM 365
CF+IIF+VIN+ N M
Sbjct: 461 CFVIIFVVINAIGNAM 476
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 412 CFIIIFIVINSGSNYM 365
CF+IIF+VIN+ N M
Sbjct: 461 CFVIIFVVINAIGNAM 476
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 412 CFIIIFIVINSGSNYM 365
CF+IIF+VIN+ N M
Sbjct: 507 CFVIIFVVINAIGNAM 522
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 412 CFIIIFIVINSGSNYM 365
CF+IIF+VIN+ N M
Sbjct: 433 CFVIIFVVINAIGNAM 448
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,587,150
Number of Sequences: 27780
Number of extensions: 193612
Number of successful extensions: 510
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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