Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F07
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 150 GQCPDSRHRTRGRVHSHS*SAEAPARFLQR 239
           GQC  SR   R  VHS +  A    + L+R
Sbjct: 49  GQCISSRRNGRHNVHSLAFGAIQLRQLLKR 78


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 166 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDD 273
           +D ++VGG      V   L +  N K L     PD+
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 330  GGARSSAARRDPGCRSRIETAGGVMTTLIKRN 425
            G   SS    D GC S ++ +  V   + K+N
Sbjct: 915  GELLSSCVSNDGGCSSLVDVSTPVNKKVYKQN 946


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
          Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 90 VQLLKTSTSDRRVEVDTIEE 31
          V+  +TSTSD   ++ T+EE
Sbjct: 20 VKEAQTSTSDEIEKITTVEE 39


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 116 SPSKSPSAMRRWTMPRFTTSYSWAGPLAFLKCRSS 220
           SP+ SPS   +       T+ S  G    L+C +S
Sbjct: 740 SPNASPSPAEQCASTTTITARSPQGSQGLLQCATS 774


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,076
Number of Sequences: 438
Number of extensions: 2138
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)