Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F06
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.42 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.3  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   6.8  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 275 PSAANVTSTKSPRDSRP*KPADIFAWKLFQHNENCSSDAMMAATVGT 135
           P+ A+ T T S   S    PA I ++ L QH   CSS   + +T  +
Sbjct: 203 PTIASATYTNSANSSIW-SPASIDSFTLEQHRSWCSSSQPVLSTTNS 248


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
          transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 3  LQEFGTRLKRGGRGMK 50
          LQEFG R +  GRG+K
Sbjct: 5  LQEFGKRGRSTGRGLK 20


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 151 RRLWEPYPKLWYSIIPILETFDR*IKIF 68
           +RL + YPK+W  +  + +  D  I+ F
Sbjct: 88  KRLKKEYPKIWEQLRAVWDPDDVFIRKF 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,834
Number of Sequences: 336
Number of extensions: 3193
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)