Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F06
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.2  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   4.2  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   4.2  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   7.4  

>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 310 VIKLIYVPVTICLRQPMLRLLNLHATAGHESLLTYSRGNCSNIMRIV 170
           ++ L Y     C+    LR L  H T GH  LL +S     N + IV
Sbjct: 16  LVILFYAKNRFCISIDHLRPLKSHRTHGHYCLLNFSLRENKNYLIIV 62


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 105 GIIEYQSLG*GSHSRRHHGVGRTI-LIMLEQFPREYVSRLSWPAVAWRFSRRNIGCRRQI 281
           GI+ +   G  + SRR      T+ L ++  F   YVS LS+  +     +RN+     +
Sbjct: 347 GIVLFAIFGIVAPSRRGSLATATVALFIISGFVSGYVSALSYKLMQGMLRKRNLLLTPFV 406

Query: 282 VTGT*ISFITYVHLIF 329
           V G  ++   + +++F
Sbjct: 407 VPGFMLAAALFFNMVF 422


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 547 RKFHAIQTKADVEAWXEVVTAKAICY 624
           R+F+AI +   +E W E + AKA+ Y
Sbjct: 495 RQFNAIGSTEFLEYWKESLEAKAVAY 520


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 349 PNSXSAFPXXVFLTSMLTPFQLLTRTYYSLCTKEKLMLSKGQSKISVVY 495
           P   S      FL  +L P  L  +TY SL +K   ++S  + KIS VY
Sbjct: 37  PKQISEDQLSNFLCKILKPTNLTPQTY-SLESKSSNLVSDCELKISSVY 84


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
 Frame = -2

Query: 481 FCFAPCLTLTSPWYINCN--KFSLTAGME*ACLLKILXL----GMRFXSWVHFEHFLKIR 320
           F FA   T  +PW  N +  KF     +    LL    L      R+  W+     L + 
Sbjct: 185 FIFAEVSTFNNPWPTNDSDVKFRAVQWIVAEVLLVFTILLNQVPPRYYKWIFKASMLLMF 244

Query: 319 *TYVIKLIYVPV 284
             YV+ +I+VPV
Sbjct: 245 IDYVMNIIWVPV 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,007
Number of Sequences: 5004
Number of extensions: 52063
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)