Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F06
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      56   4e-10
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          53   2e-09
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   6e-05
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 55.6 bits (128), Expect = 4e-10
 Identities = 25/65 (38%), Positives = 39/65 (60%)
 Frame = +1

Query: 157 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSRMFTLFSRN 336
           M   + F L WNN+ +++++ F  L    D VDVTLA +GR L+AH++VLS     F   
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 337 VQNEP 351
           +++ P
Sbjct: 61  LKSTP 65



 Score = 26.6 bits (56), Expect = 0.21
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 314 CSPYFQEMFKMNPT--PKAHSQXXYF*QACLLHSSC*RELITVYVPRRS*C*ARGKAKLA 487
           CSPYF+E+ K  P   P    Q   F     L        + V+  +RS         L+
Sbjct: 53  CSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVH--QRS---------LS 101

Query: 488 SFISTAEQLQVKGLT 532
           SF+ TAE L+V GLT
Sbjct: 102 SFLKTAEVLRVSGLT 116



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 426 LLQFMYQGEVNVKQ 467
           L++F+Y GEVNV Q
Sbjct: 84  LVEFIYHGEVNVHQ 97


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 25/61 (40%), Positives = 37/61 (60%)
 Frame = +1

Query: 169 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSRMFTLFSRNVQNE 348
           + + L WNN+ +NM++ FH LL     VDVTLA     L+AHK+VLS   + F + + + 
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 349 P 351
           P
Sbjct: 69  P 69



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 426 LLQFMYQGEVNVKQGAKQN 482
           +++F+Y+GE++V Q   Q+
Sbjct: 89  IIEFVYRGEIDVSQAELQS 107


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 157 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 273
           M   + F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +1

Query: 286 QAHKLVLSRMFTLFSRNVQNEPNSXSAFPXXVFLTSMLTPFQLLTRTYYSLCTKEKLMLS 465
           ++ ++ + RM  ++ +  +   N  S     V L + L P  +         TK+ L  S
Sbjct: 492 KSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEEEKKKTKQSLSPS 551

Query: 466 KGQSKISVV 492
           + QSK+ ++
Sbjct: 552 ENQSKMEIL 560


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -3

Query: 615 CLCCDDL-GPG 586
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 651 VSKSVSNLVITDCLCCDDLGPGLDVGF 571
           +S + S      CL CD++   LD  F
Sbjct: 316 ISSTPSQASSCSCLDCDEIRESLDTQF 342


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 223 ESLLTYSRGNCSNIMR 176
           +  L+Y RGN +N++R
Sbjct: 67  QGFLSYWRGNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 223 ESLLTYSRGNCSNIMR 176
           +  L+Y RGN +N++R
Sbjct: 67  QGFLSYWRGNLANVIR 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,046
Number of Sequences: 438
Number of extensions: 4107
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)