Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F05
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 243 2e-63
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 168 8e-41
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 167 2e-40
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 138 5e-32
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 135 5e-31
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 132 4e-30
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 125 7e-28
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 117 2e-25
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 101 8e-21
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 97 2e-19
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 97 2e-19
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 91 2e-17
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 86 4e-16
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 85 7e-16
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 83 4e-15
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 83 5e-15
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 82 9e-15
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 80 3e-14
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 79 6e-14
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 77 3e-13
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 72 9e-12
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 69 9e-11
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 68 2e-10
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 66 6e-10
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 64 1e-09
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 62 6e-09
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 62 1e-08
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 61 1e-08
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 58 1e-07
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 53 5e-06
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 51 1e-05
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 50 3e-05
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 44 0.002
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 44 0.002
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 44 0.002
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 44 0.003
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 42 0.011
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 41 0.020
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 41 0.020
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.035
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 40 0.035
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 40 0.046
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 39 0.060
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 38 0.14
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 38 0.14
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 38 0.18
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.18
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 36 0.56
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 36 0.56
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 35 0.98
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 35 1.3
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 35 1.3
UniRef50_A5ZX92 Cluster: Putative uncharacterized protein; n=1; ... 34 1.7
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 34 1.7
UniRef50_Q6CT08 Cluster: Autophagy-related protein 9; n=1; Kluyv... 34 2.3
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 33 3.0
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 3.5
UniRef50_P97041 Cluster: Inner membrane protein oxaA; n=4; Lepto... 33 4.0
UniRef50_UPI0000673B13 Cluster: hypothetical protein Ecol1_01000... 33 5.2
UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 5.2
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.2
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 5.2
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 33 5.2
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 33 5.2
UniRef50_Q01317 Cluster: Ankyrin repeat protein nuc-2; n=12; Pez... 33 5.2
UniRef50_A6VRB0 Cluster: Transcriptional regulator, LysR family;... 32 6.9
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 32 6.9
UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1; ... 32 9.2
UniRef50_A0P432 Cluster: Putative uncharacterized protein; n=2; ... 32 9.2
UniRef50_A0DEB5 Cluster: Chromosome undetermined scaffold_48, wh... 32 9.2
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 243 bits (595), Expect = 2e-63
Identities = 122/146 (83%), Positives = 129/146 (88%), Gaps = 1/146 (0%)
Frame = +3
Query: 87 DGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 263
DGYSGVEVR P + +TQ+VLGEKGRRIRELT+VVQKRF PE SVELYAEKV
Sbjct: 32 DGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKV 91
Query: 264 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 443
ATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEVVVSGKLRGQRAKSMK
Sbjct: 92 ATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMK 151
Query: 444 FVDGLMIHSGDPCNDYVNTATRHVLL 521
FVDGLMIHSGDP N YV+TA RHVLL
Sbjct: 152 FVDGLMIHSGDPVNYYVDTAVRHVLL 177
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 168 bits (408), Expect = 8e-41
Identities = 81/145 (55%), Positives = 104/145 (71%), Gaps = 1/145 (0%)
Frame = +3
Query: 90 GYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
GY+GVEVR P ++ TQ VLGE+GRRI ELTS++ KRF + + + +YAE+V
Sbjct: 34 GYAGVEVRKTPSKLEVIVKASNTQGVLGEQGRRIHELTSLIVKRFKLSPEGIAIYAERVE 93
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 446
RGL A QAE+L+ KL+ GL +RRA YGVLRF M +GA+G EVV+SGKLR RAKS K+
Sbjct: 94 ERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAKGVEVVISGKLRAARAKSQKY 153
Query: 447 VDGLMIHSGDPCNDYVNTATRHVLL 521
DG MIHSG P D+++ A RHVL+
Sbjct: 154 ADGFMIHSGQPTRDFIDIAIRHVLM 178
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 167 bits (405), Expect = 2e-40
Identities = 82/143 (57%), Positives = 106/143 (74%), Gaps = 1/143 (0%)
Frame = +3
Query: 87 DGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 263
DG++GVE R P + KT+ VLGEKGRRIRELT+ +Q+RFN E ++L+AE+V
Sbjct: 83 DGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGRRIRELTACLQQRFNYKEGKLQLFAERV 142
Query: 264 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 443
RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+GCEV + GK++GQRAKSM
Sbjct: 143 EVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKGCEVTIGGKIKGQRAKSMT 202
Query: 444 FVDGLMIHSGDPCNDYVNTATRH 512
F DG MI SG +V+TATRH
Sbjct: 203 FRDGYMIKSGTAHKHFVDTATRH 225
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 138 bits (335), Expect = 5e-32
Identities = 62/143 (43%), Positives = 97/143 (67%), Gaps = 1/143 (0%)
Frame = +3
Query: 90 GYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
GY+G+EVR P + K Q V+G +G++ +ELT +QKRF + ++++AE +
Sbjct: 46 GYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDDQIQIWAEPIK 105
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 446
+GLCA AQ E++ YKL+ + VR A +++ +++ GA+GCE+++SGKL+ QRAK+MKF
Sbjct: 106 FKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIIISGKLKQQRAKTMKF 165
Query: 447 VDGLMIHSGDPCNDYVNTATRHV 515
G MI +G P NDY++ A RHV
Sbjct: 166 KQGYMICTGQPKNDYIDVAVRHV 188
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 135 bits (327), Expect = 5e-31
Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Frame = +3
Query: 84 RDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
++GY G EVR P + T+ + GRR++E+ ++QKR+ + E S+E++ ++
Sbjct: 32 KEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRLQEVRMMIQKRWRLKEDSLEIFIDR 91
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 440
+ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GARGCEV +SGKLRG RA +
Sbjct: 92 IQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKLRGARASTS 151
Query: 441 KFVDGLMIHSGDPCNDYVNTATRHV 515
K+ +G M+ SGD +V A H+
Sbjct: 152 KYKEGYMVKSGDVTKQFVTQAVGHI 176
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 132 bits (320), Expect = 4e-30
Identities = 72/124 (58%), Positives = 85/124 (68%)
Frame = +3
Query: 150 KTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL 329
+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR+KL+GGL
Sbjct: 108 QTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLRFKLLGGL 167
Query: 330 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 509
VRRA YGVL F+MESG +GCEV + +I SG P DY+N+ R
Sbjct: 168 VVRRAGYGVLSFVMESGTKGCEV----------------IGWYIISSGQPVKDYINSVVR 211
Query: 510 HVLL 521
HVLL
Sbjct: 212 HVLL 215
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 125 bits (301), Expect = 7e-28
Identities = 55/117 (47%), Positives = 81/117 (69%)
Frame = +3
Query: 150 KTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL 329
K +GEK R+R+ + +R +P++SVE+ EKV +GLCA+ QA +R K++GG+
Sbjct: 65 KPHEAIGEKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGV 124
Query: 330 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNT 500
RRA L+ + A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT
Sbjct: 125 QYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINT 181
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 117 bits (281), Expect = 2e-25
Identities = 75/145 (51%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Frame = +3
Query: 87 DGYSGVEVRSHPYVQNHYY-GHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 263
+GYSG EVR P +T +VLGEKG++I+ELTSVVQKRF E SVEL AEKV
Sbjct: 32 NGYSGDEVRVTPMCTEIIIRATQTHNVLGEKGKKIKELTSVVQKRFEFLENSVELCAEKV 91
Query: 264 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 443
RG AIAQAESLRYKL+GGLA+ L QRAKSMK
Sbjct: 92 NNRGFYAIAQAESLRYKLLGGLAM--------------------------LCAQRAKSMK 125
Query: 444 FVDGLMIHSGDPCNDYVNTATRHVL 518
F DG +I SG P DY++ A RHVL
Sbjct: 126 FKDGYLISSGQPVKDYIDLAVRHVL 150
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 101 bits (243), Expect = 8e-21
Identities = 47/63 (74%), Positives = 53/63 (84%)
Frame = +3
Query: 333 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 512
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 513 VLL 521
LL
Sbjct: 90 ALL 92
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 97.1 bits (231), Expect = 2e-19
Identities = 44/118 (37%), Positives = 74/118 (62%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
V+G+ R+ ++ ++ RF ++ ++ +K+ RGL A ++LR KL + +RR
Sbjct: 64 VMGDNHYRLHKIEYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRR 123
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHV 515
A Y ++R M +GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+
Sbjct: 124 AAYSIIRTAMRAGAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHI 181
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 97.1 bits (231), Expect = 2e-19
Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Frame = +3
Query: 84 RDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
R GY G++++ P + + V+G GRRIRELT +++K+F + +E+ E+
Sbjct: 27 RAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EE 84
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 440
+ L A QA L L G+ RRA Y LR IM +GARG E+ +SGKL G+RAKS+
Sbjct: 85 IKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSI 144
Query: 441 KFVDGLMIHSGDPCNDYVNTATRHVLL 521
+F G + G+P V+ LL
Sbjct: 145 RFYQGYLAKVGNPAETLVSKGYAQALL 171
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 90.6 bits (215), Expect = 2e-17
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Frame = +3
Query: 84 RDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
R GY G+E+ P Q Y K V+G+ G+ IR+LT V ++++ ++ A++
Sbjct: 27 RAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQE 84
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 440
V L A A L + G R+A + LR +M +GA GCEVV+SGKL G R++
Sbjct: 85 VKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVE 144
Query: 441 KFVDGLMIHSGDPCNDYVN 497
KFVDG + HSG+P + V+
Sbjct: 145 KFVDGYIKHSGNPVEEVVD 163
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 86.2 bits (204), Expect = 4e-16
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +3
Query: 90 GYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
GYS VE++ P + Y ++ +++G +G+ I+++T V+++ F IP V + KV
Sbjct: 34 GYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVE 91
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 446
L A A L L G RRA Y LR IM +GA G +V VSGKLRG+RA+ K+
Sbjct: 92 EPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKY 151
Query: 447 VDGLMIHSGDPCNDYVNTATRHVLL 521
+ G + SG+ + A HVLL
Sbjct: 152 IAGKVYKSGNQVVRLTDRAIAHVLL 176
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 85.4 bits (202), Expect = 7e-16
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Frame = +3
Query: 84 RDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
R GY G+++ P Q + K V+G+ G+++R+LT + ++I VE+ ++
Sbjct: 27 RAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQ 84
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 440
V A AE L L G R+A +R IMESGA GCEV+V+GKL G R+++
Sbjct: 85 VQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQ 144
Query: 441 KFVDGLMIHSGDPCNDYV 494
KF +G + H G+P V
Sbjct: 145 KFTEGYIKHCGEPSETIV 162
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 83.0 bits (196), Expect = 4e-15
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Frame = +3
Query: 84 RDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
R GYS ++ + P + + K V+G KG+ ++ELT + +++ +E+ ++
Sbjct: 26 RAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQ 83
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 440
V L + L G+ R+ + +R +M SGA+G ++VSGKL G+R+++
Sbjct: 84 VENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTE 143
Query: 441 KFVDGLMIHSGDPCNDYVN 497
KF+DG M H G+P VN
Sbjct: 144 KFMDGYMKHCGEPAEALVN 162
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 82.6 bits (195), Expect = 5e-15
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Frame = +3
Query: 81 GRDGYSGVEVRSHPYVQNHY-YGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAE 257
GR GY G+ ++ P Y + +G +GR IR + VQ+RF + + V + +
Sbjct: 33 GRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLLGR-VSIEVK 91
Query: 258 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 437
++ + L A L L G+ RRA YG LR IM +GA+G +++SGKL G RA++
Sbjct: 92 ELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARART 151
Query: 438 MKFVDGLMIHSGDPCNDYV 494
KF++G + + G+P ++Y+
Sbjct: 152 EKFMEGAVKYCGEPGDEYM 170
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 81.8 bits (193), Expect = 9e-15
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Frame = +3
Query: 81 GRDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAE 257
GR GY G++V P Q K V+G+ G+ IR++T+ ++ RFN+ + V++ +
Sbjct: 26 GRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--Q 83
Query: 258 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 437
+V L A A+ L L G R+A + + IMESGA G E+V+SGK+ G R++
Sbjct: 84 EVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRV 143
Query: 438 MKFVDGLMIHSGDPCNDYVNT 500
KF G + H+G+P + V++
Sbjct: 144 EKFNRGYVKHNGEPAEEIVDS 164
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 79.8 bits (188), Expect = 3e-14
Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = +3
Query: 90 GYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
G+ GV++ P Q + + V+G+ GRRI+ LT + K F I V + ++V
Sbjct: 29 GFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALTEKL-KDFGIENPQVSV--DEVE 85
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 446
A A L L G RRA Y L IME+GA+GCE+ +SGKL +RA++ KF
Sbjct: 86 KPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKF 145
Query: 447 VDGLMIHSGDPCNDYV 494
V G ++H+GDP V
Sbjct: 146 VAGTIVHTGDPAESMV 161
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 79.0 bits (186), Expect = 6e-14
Identities = 44/120 (36%), Positives = 67/120 (55%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
V+G KG I+ + V+++ F I +++ +V + L A A + L+ G+ RR
Sbjct: 55 VIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRR 112
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLL 521
A L IM +GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL
Sbjct: 113 AALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLL 172
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 76.6 bits (180), Expect = 3e-13
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Frame = +3
Query: 84 RDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
R GY G++V+ P Y + V+G G+ +R +T ++ +F++ VE+ ++
Sbjct: 26 RAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KE 83
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 440
V L A + L G+ RR Y +R IM +GA+G EV +SGK+RG R+ +
Sbjct: 84 VDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATA 143
Query: 441 KFVDGLMIHSGDPCNDYV 494
KF DG + G+P +V
Sbjct: 144 KFTDGYIKKCGEPSVKHV 161
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 71.7 bits (168), Expect = 9e-12
Identities = 34/52 (65%), Positives = 40/52 (76%)
Frame = +3
Query: 366 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLL 521
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLL
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLL 131
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 68.5 bits (160), Expect = 9e-11
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Frame = +3
Query: 93 YSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVAT 269
Y+GVE+ P + Y + ++G+ G+ I++L V++K F + + + A +
Sbjct: 31 YAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--N 88
Query: 270 RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 449
L A A L L G RRA + +R IM SGA G EV+VSGKL +RAK K
Sbjct: 89 PELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLK 148
Query: 450 DGLMIHSGDPCNDYVNTA 503
+G + SG ++ A
Sbjct: 149 EGTVYKSGQQLEKIIDRA 166
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 67.7 bits (158), Expect = 2e-10
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Frame = +3
Query: 93 YSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVAT 269
Y+GVEV P + Y + ++G GR I++L + +K F + + + V
Sbjct: 31 YAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVEN 88
Query: 270 RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 449
L A A L L G RRA + +R IM +GA G E+++SGKL +RA+ K
Sbjct: 89 PELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLK 148
Query: 450 DGLMIHSGDPCNDYVNTATRHVLL 521
+G++ SG ++ A +L
Sbjct: 149 EGIVYKSGQQLEKMIDRAIAIAML 172
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 65.7 bits (153), Expect = 6e-10
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Frame = +3
Query: 66 IPHRTGRDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSV 242
+ +R + GY E+ P + Y + ++G KG ++E+++++ + + +
Sbjct: 28 LEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQI 87
Query: 243 ELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLR 419
++ K+ + A + + G+ RR + +R +ME+GA+G E+VVSGKL
Sbjct: 88 DVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLS 147
Query: 420 GQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLL 521
+RA+ K G + G + V A HVLL
Sbjct: 148 TERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLL 181
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 64.5 bits (150), Expect = 1e-09
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Frame = +3
Query: 90 GYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
GY+G+E+ P + Y ++G G IR+L +++Q F + ++V + V
Sbjct: 32 GYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVP 89
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 446
L A A + L + RR +LR +ME+GA G E+++SGKLR +RA+ K
Sbjct: 90 DPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKL 149
Query: 447 VDGLMIHSGDPCNDYVNTATRHVLL 521
G + +GD + V+ A LL
Sbjct: 150 KAGRIYKAGDMVDYVVDRAVGKALL 174
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 62.5 bits (145), Expect = 6e-09
Identities = 35/135 (25%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = +3
Query: 78 TGRDGYSGVEVRSHPYVQN-HYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 254
T G+ + ++ P+ N Y ++ V+G +G +++++T ++K++ I +E+
Sbjct: 24 TENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV-- 81
Query: 255 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 434
+ V L A+ + L G + R+A L +++GA+G + +SGK+ G+RA+
Sbjct: 82 KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERAR 141
Query: 435 SMKFVDGLMIHSGDP 479
KF+ G + +SG+P
Sbjct: 142 YQKFIYGNVKYSGEP 156
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 61.7 bits (143), Expect = 1e-08
Identities = 33/124 (26%), Positives = 64/124 (51%)
Frame = +3
Query: 150 KTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL 329
K ++G KG++++ L +++ +FN+ +++ E +A + + G+
Sbjct: 48 KKNRIIGRKGQQVKALADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGI 105
Query: 330 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 509
RRA LR + E+ +G EV++SGKL +R++ K+ G++I +G + V A
Sbjct: 106 RFRRAAIIALRQLQEANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVI 165
Query: 510 HVLL 521
VLL
Sbjct: 166 PVLL 169
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 61.3 bits (142), Expect = 1e-08
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = +3
Query: 90 GYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
G+SGVEV +P + + + V+G KG IRELT ++K F++ V++ +++
Sbjct: 29 GFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIE 86
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES-GARGCEVVVSGKLRGQRAKSMK 443
T L + + G A RRA ++ IME A G ++ +SGKLRG R+ K
Sbjct: 87 TPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEK 146
Query: 444 FVDGLMIHSG 473
G++ +G
Sbjct: 147 HTSGILPRAG 156
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 58.0 bits (134), Expect = 1e-07
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Frame = +3
Query: 78 TGRDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 254
T R G+ G+E P + + V+G +G+ I EL ++ F + +E+
Sbjct: 29 TERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHELQYRLKSDFKLENPRLEV-- 86
Query: 255 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 434
++ L A A L L G RRA + + IM++GARGC +++SGK+ G R +
Sbjct: 87 NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSGKISGPRHR 146
Query: 435 SMKFVDGLMIHSGDPCNDYVN 497
KF G + G+ +++
Sbjct: 147 VQKFQQGHIKFCGETALQFMD 167
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 52.8 bits (121), Expect = 5e-06
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Frame = +3
Query: 138 YYGHKTQSVLGEKGRRIRELT-SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYK 314
+Y K +K + LT +++ F I +++ + + + + Q+ ++
Sbjct: 90 HYHQKLHCSFTKKLKNKLTLTKNIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEA 149
Query: 315 L-IGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDY 491
+ R + LRF++ SG RGC + + G R +R K+ KF GL+ HSG ND+
Sbjct: 150 FNYTNKSFRSIIFNTLRFLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDW 209
Query: 492 VNT 500
+++
Sbjct: 210 IDS 212
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 51.2 bits (117), Expect = 1e-05
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +3
Query: 150 KTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGL 329
K ++LG+ G I +LT +QK E + + + L AI AE + KL
Sbjct: 73 KPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAIKLENRA 132
Query: 330 AVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM 461
R A +R M+SGA+G + VSG+L G A+S + +G M
Sbjct: 133 PFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEM 177
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 50.0 bits (114), Expect = 3e-05
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = +3
Query: 423 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLL 521
QRAKSMKF DG M+ SG P +Y+++A RHVLL
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLL 34
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 44.4 bits (100), Expect = 0.002
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
V+G+ G I+EL +++ + +V + ++ + A A + ++ A RR
Sbjct: 76 VIGKGGESIKELRGDIERL--VSAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRR 133
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 455
A + +MESGARG +V++SG+L G ++A++ K ++G
Sbjct: 134 AMKQAAQRVMESGARGVKVILSGRLGGAEQARTEKVLEG 172
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 44.0 bits (99), Expect = 0.002
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
++G+ G+ + +L +++ I ++ V++ ++ L A AE++ +L G +A RR
Sbjct: 75 IIGKAGQEVDKLKEELKR---ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRR 131
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 455
A + M GA G ++ VSG+L G + A+S F +G
Sbjct: 132 AVKMAIASAMRMGAEGIKIQVSGRLNGAEMARSEMFKEG 170
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 44.0 bits (99), Expect = 0.002
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Frame = +3
Query: 96 SGVEVRSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRG 275
S V +R P V ++ E+ R L +++ +F + + +E+ +
Sbjct: 33 SKVIIRQTPIVNRVIIYSARPKMISEE--RKAHLAKLLELKFGLEKPVIEVLP--IENPN 88
Query: 276 LCAIAQAESLRYKLIGGL-AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVD 452
L A AE L + + A RR L IM +GA G E+V++G+L GQR K+ +F
Sbjct: 89 LDAHVIAERLAMGIERNIRAYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKA 148
Query: 453 GLMIHSG 473
G + +G
Sbjct: 149 GNLRKTG 155
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 43.6 bits (98), Expect = 0.003
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 102 VEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGL 278
VE+ HP V + + V+G KG I ++ + VQKR N + V++ +++ L
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMEL 113
Query: 279 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 422
A A+++ +L ++ R+ M+SGA+G ++ VSG+L G
Sbjct: 114 NAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGG 161
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 41.5 bits (93), Expect = 0.011
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = +3
Query: 90 GYSGVEV-RSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
G +E+ R+ V+ Y + ++G+KG+ I L + +Q N+ + + L E+V
Sbjct: 56 GIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ---NLVGRRINLKVEEVG 112
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 422
L A AE + +L + RR +L M++GA+G ++ ++G+L G
Sbjct: 113 RPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGIKIQMAGRLGG 164
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 40.7 bits (91), Expect = 0.020
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 87 DGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSV 206
DGYSGV+VR P ++ + +TQ+ LGEK RRIREL V
Sbjct: 20 DGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 40.7 bits (91), Expect = 0.020
Identities = 32/138 (23%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Frame = +3
Query: 111 RSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIA 290
R+ +++ + Y + +++G KG I L+ Q+ I + V++ +V + A
Sbjct: 61 RTTKHIKINIYAARPGAIVGHKGEEINNLS---QELTRITGKEVKIDVIEVIKPEIEAQL 117
Query: 291 QAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMI 464
E++ Y+L ++ RRA ++ M +GA G + +G+L G + A++ ++ +G + +
Sbjct: 118 IGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVRIRCAGRLGGAEIARAEQYKEGKIPL 177
Query: 465 HSGDPCNDYVNTATRHVL 518
H+ DY + T H +
Sbjct: 178 HTLRANVDYA-SVTAHTI 194
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 39.9 bits (89), Expect = 0.035
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 87 DGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVV 209
DGYS V+VR P ++ +TQ+ L EKGRRIRELT V+
Sbjct: 143 DGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 39.9 bits (89), Expect = 0.035
Identities = 25/87 (28%), Positives = 46/87 (52%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
++G KG I L ++++FN + V + E++ T L A AES+ ++ + +
Sbjct: 76 IIGRKGSEITSLREELERKFN---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKV 132
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG 422
A + M GA+G +V+V+G+L G
Sbjct: 133 AMKRAIMNAMRKGAQGIKVMVAGRLGG 159
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 39.5 bits (88), Expect = 0.046
Identities = 27/87 (31%), Positives = 45/87 (51%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
V+G+KG I L +QK +P V + E+V + A A+S+ +L + RR
Sbjct: 76 VIGKKGEDIEALKRDLQKIVGVP---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRR 132
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG 422
A ++ M GA+G +++ SG+L G
Sbjct: 133 AMKRAMQNAMRLGAQGIKIMSSGRLNG 159
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 39.1 bits (87), Expect = 0.060
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 87 DGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSV 206
DGYS V+VR P ++ +TQ+ L EKGRRIRELT V
Sbjct: 410 DGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 37.9 bits (84), Expect = 0.14
Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
V+G+ G+ + ++ ++K + ++ +++ ++ L A AE + +L ++ RR
Sbjct: 75 VIGKAGQEVDKIKEELKK---LTKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRR 131
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDY 491
A + M GA G +++ SG+L G + A+S ++ +G + +H+ DY
Sbjct: 132 AMKSTIAATMRMGAEGIKIMTSGRLGGAEMARSEQYKEGRIPLHTFRADIDY 183
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 37.9 bits (84), Expect = 0.14
Identities = 25/87 (28%), Positives = 44/87 (50%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
V+G+KG I L + ++ +P V + E+V + A A+S+ +L + RR
Sbjct: 76 VIGKKGEDIENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRR 132
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG 422
A ++ M GA G +++ SG+L G
Sbjct: 133 AMKRAMQNAMRLGALGIKIMSSGRLNG 159
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 37.5 bits (83), Expect = 0.18
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Frame = +3
Query: 66 IPHRTGRDGYSGVEV-RSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSV 242
I R G S V + RS ++ K ++G KG + +L + +++ + + +
Sbjct: 43 IKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VKNKDI 100
Query: 243 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 422
L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G++ G
Sbjct: 101 SLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKGRIGG 160
Query: 423 -QRAKSMKFVDGLM 461
A++ F+ G M
Sbjct: 161 ADLARAEWFLVGRM 174
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 37.5 bits (83), Expect = 0.18
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Frame = +3
Query: 90 GYSGVEV-RSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
G +E+ R + V+ + + + V+G+ G I L ++K +SV L +V
Sbjct: 51 GIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALRLQLEKMLG---KSVALNIVEVK 107
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 443
+ A AE++ +L + RRA + M GARG + VSG+L G + A++
Sbjct: 108 NPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMGARGIKTQVSGRLGGAEIARTEH 167
Query: 444 FVDG 455
+ DG
Sbjct: 168 YHDG 171
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 37.5 bits (83), Expect = 0.18
Identities = 23/125 (18%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +3
Query: 78 TGRDGYSGVEVRSH-PYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 254
+G +G + +E++ +Q Y + ++ +K RR+ EL VQK N + + +
Sbjct: 55 SGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAI 114
Query: 255 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 434
+++ AE + +L ++ R+A + ++ +G +V ++G++ G+
Sbjct: 115 TRISNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIA 174
Query: 435 SMKFV 449
++++
Sbjct: 175 RVEWI 179
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 35.9 bits (79), Expect = 0.56
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Frame = +3
Query: 66 IPHRTGRDGYSGVEVRSHPYVQN-HYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSV 242
+ +R G V + P N + + K V+G+KG I + +++ + P
Sbjct: 42 VQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDKPVNLN 101
Query: 243 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 422
+ +K T C AES+ ++ RR LR M G G ++++SG+L G
Sbjct: 102 IIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILISGRLNG 158
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 35.9 bits (79), Expect = 0.56
Identities = 23/87 (26%), Positives = 47/87 (54%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
V+G G+R+ E+ ++ ++ + V+L +++ L A A S+ ++ +A RR
Sbjct: 76 VIGRGGQRVDEMRHFLE---DLIGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRR 132
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG 422
A + M++GA+G ++ SG+L G
Sbjct: 133 AMKQAIFRSMQAGAKGIKICASGRLGG 159
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 35.1 bits (77), Expect = 0.98
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
VLG++G+ + + + VQK VE+ +V A A + ++ + R
Sbjct: 76 VLGQEGKNVSNIATAVQKIAKDRNLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRT 135
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 455
+R +++G +G + VSG+L G + A++ +++G
Sbjct: 136 VQKLAIRKALKAGVKGIKTSVSGRLGGVEMARTEGYIEG 174
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 34.7 bits (76), Expect = 1.3
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQK---RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLA 332
V+G G + L S + K + + V + ++ L A + + L +A
Sbjct: 77 VIGRGGADVERLRSELSKIVDTYKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVA 136
Query: 333 VRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 455
RRA G ++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 137 FRRAMRGAIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 34.7 bits (76), Expect = 1.3
Identities = 26/77 (33%), Positives = 33/77 (42%)
Frame = +3
Query: 192 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 371
EL K P V L V + AI AE L +L +A RRA VL I
Sbjct: 99 ELNKFRAKNGVSPTAKVALQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQ 158
Query: 372 ESGARGCEVVVSGKLRG 422
+G ++ VSG+L G
Sbjct: 159 RDRVQGAKIQVSGRLNG 175
>UniRef50_A5ZX92 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 433
Score = 34.3 bits (75), Expect = 1.7
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +3
Query: 93 YSGVEVRSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 272
Y+G SH H++GH + R ++E+T ++QK E +V A+K+A R
Sbjct: 84 YTGHYEHSHEVNHEHHHGHTHSHEHPYEHRGMKEITEIIQK----SEMTVR--AKKMAMR 137
Query: 273 GLCAIAQAES 302
+AQAES
Sbjct: 138 VFDILAQAES 147
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.3 bits (75), Expect = 1.7
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIAQAE 299
+LG+ G+R+RE+ V R NIP QS E +E + G IAQAE
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIAQAE 227
>UniRef50_Q6CT08 Cluster: Autophagy-related protein 9; n=1;
Kluyveromyces lactis|Rep: Autophagy-related protein 9 -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 908
Score = 33.9 bits (74), Expect = 2.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 96 SGVEVRSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVEL 248
S +E HPY Y KTQ LG+ R R L KRF P++S +L
Sbjct: 812 SPIEPSYHPYSSTKDYSWKTQFALGKNSNRKRNLNRSRVKRF--PDRSSDL 860
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 33.5 bits (73), Expect = 3.0
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = +3
Query: 84 RDGYSGVEV-RSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
R G S +E+ R V Y + V+G G + ++K + + ++L +
Sbjct: 48 RAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---LTGKQIQLNILE 104
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKS 437
V + A A+ + +L +A RRA + M +GA G + SG+L G + ++S
Sbjct: 105 VKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCSGRLGGAEMSRS 164
Query: 438 MKFVDG 455
+ +G
Sbjct: 165 EGYREG 170
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 3.5
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 228 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 401
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 402 V 404
+
Sbjct: 174 I 174
Score = 23.0 bits (47), Expect(2) = 3.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +3
Query: 384 RGCEVVVSGKLRGQRAKSMKFVDGLMI 464
RG ++ +L GQ+ S+ DG ++
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVV 227
>UniRef50_P97041 Cluster: Inner membrane protein oxaA; n=4;
Leptospira|Rep: Inner membrane protein oxaA - Leptospira
interrogans
Length = 627
Score = 33.1 bits (72), Expect = 4.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 404 YYYFTTASTRFHDETKDTITRTTDCKTSNQFISERFSLSDSAEP 273
Y++F ST+ + ETK T + T T Q S + S+SA+P
Sbjct: 24 YFFFPNTSTKKNTETKQTQSDKTSENTKQQITSGKTKESNSADP 67
>UniRef50_UPI0000673B13 Cluster: hypothetical protein
Ecol1_01000710; n=1; Escherichia coli 101-1|Rep:
hypothetical protein Ecol1_01000710 - Escherichia coli
101-1
Length = 296
Score = 32.7 bits (71), Expect = 5.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 23 KTKIVVMEFKAELNDSSQDWPRWLLRCGGAFTPIRSKSLLWPQDAERAWR 172
KT VV+ D + P+WL + P ++LWP A WR
Sbjct: 5 KTDWVVVATSGPTIDGREIDPKWLTDAAEVYNPDEHTAMLWPFHASAGWR 54
>UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H
- Ostreococcus tauri
Length = 322
Score = 32.7 bits (71), Expect = 5.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 318 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 464
+ GL R CYG R F+M+ GC+ S +L R K++ VD LM+
Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 32.7 bits (71), Expect = 5.2
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +3
Query: 180 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 359
++IREL SV Q +I + + A A RGL A+ ES+R ++ L + +C G+
Sbjct: 117 KKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRLPMLTVLKL-HSCEGIT 175
Query: 360 RFIMESGARG 389
M + + G
Sbjct: 176 SASMAAISHG 185
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 5.2
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 345 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 443
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 32.7 bits (71), Expect = 5.2
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Frame = +3
Query: 90 GYSGVEV-RSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 266
G VE+ R V + Y ++ ++G + + + + K +Q V L +V
Sbjct: 52 GIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG-RKQLVSLKVVEVQ 110
Query: 267 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 443
L A A + + ++ R A V++ ++++GARG + VSG+L G + A+
Sbjct: 111 IPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVSGRLGGVEMAREEG 170
Query: 444 FVDGLM 461
+ G+M
Sbjct: 171 YTQGVM 176
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 32.7 bits (71), Expect = 5.2
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +3
Query: 84 RDGYSGVEV-RSHPYVQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEK 260
R G S V++ R+ ++ + + V+G +G + ++K + + V+L +
Sbjct: 48 RAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---LTGKQVQLNILE 104
Query: 261 VATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSM 440
V + A A+ + +L ++ RRA ++ M+ GA+G V SG+L G
Sbjct: 105 VKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCSGRLGGAEMSRS 164
Query: 441 KF 446
+F
Sbjct: 165 EF 166
>UniRef50_Q01317 Cluster: Ankyrin repeat protein nuc-2; n=12;
Pezizomycotina|Rep: Ankyrin repeat protein nuc-2 -
Neurospora crassa
Length = 1066
Score = 32.7 bits (71), Expect = 5.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 80 WPRWLLRCGGAFTPIRSKSLLWPQDAERAWRER 178
WPRW + CGG P+ + +L Q A R R
Sbjct: 763 WPRWTINCGGIDVPVSTLTLAQFQTVTAAARNR 795
>UniRef50_A6VRB0 Cluster: Transcriptional regulator, LysR family;
n=1; Marinomonas sp. MWYL1|Rep: Transcriptional
regulator, LysR family - Marinomonas sp. MWYL1
Length = 316
Score = 32.3 bits (70), Expect = 6.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 56 ELNDSSQDWPRWLLRCGGAFTPIRSKSLLWPQ 151
+++DSS W W A PIRSKS+LW +
Sbjct: 195 QVDDSSYQWKTWFEEL--AICPIRSKSILWAE 224
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 32.3 bits (70), Expect = 6.9
Identities = 23/104 (22%), Positives = 47/104 (45%)
Frame = +3
Query: 138 YYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL 317
Y G V G K RRI EL VQK N + + + ++ AE + +L
Sbjct: 66 YMGFPKLLVEG-KPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIAGQL 124
Query: 318 IGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 449
++ R+A + ++ +G +V ++G++ G+ ++++
Sbjct: 125 RNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWI 168
>UniRef50_Q2RZ88 Cluster: Putative uncharacterized protein; n=1;
Salinibacter ruber DSM 13855|Rep: Putative
uncharacterized protein - Salinibacter ruber (strain DSM
13855)
Length = 363
Score = 31.9 bits (69), Expect = 9.2
Identities = 28/109 (25%), Positives = 43/109 (39%)
Frame = +3
Query: 162 VLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRR 341
+L RR + R++ S + R + +A E Y L RR
Sbjct: 245 LLANPSRRTITSVDLGLVRYDRGPDSTAQNVRRRTVRVVGPLAPRELAAYDLRLPNEARR 304
Query: 342 ACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 488
C GV R +E G VV + + G+R K + G + ++GD C D
Sbjct: 305 PCVGVRRVRVER-LDGTTVVSAPRRPGRRPKRGRLARGALPYAGDDCLD 352
>UniRef50_A0P432 Cluster: Putative uncharacterized protein; n=2;
Rhodobacteraceae|Rep: Putative uncharacterized protein -
Stappia aggregata IAM 12614
Length = 460
Score = 31.9 bits (69), Expect = 9.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 288 AQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGL 458
A AESL L A++R G+ F + + R C+V++ G + ++ +D L
Sbjct: 87 ADAESLLRSLTAARAIQRTGDGLTDFHLTAFGRSCQVIIGGDCLDKGPSNLDLLDSL 143
>UniRef50_A0DEB5 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 782
Score = 31.9 bits (69), Expect = 9.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 147 HKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 263
+K +L EK +I + S QK ++ +QS+E Y+EK+
Sbjct: 219 NKELCMLREKENKINDKKSKFQKNIDLIQQSIEFYSEKI 257
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,174,952
Number of Sequences: 1657284
Number of extensions: 9617502
Number of successful extensions: 25325
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 24695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25307
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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