Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F05
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 205 3e-54
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 0.97
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 27 1.7
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 26 3.0
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.9
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 6.8
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.0
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 25 9.0
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 9.0
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 205 bits (501), Expect = 3e-54
Identities = 100/146 (68%), Positives = 115/146 (78%), Gaps = 1/146 (0%)
Frame = +3
Query: 87 DGYSGVEVRSHPYVQNHYY-GHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 263
+GYSG EVR P TQ VLGEKGRRIRELT++VQKRF E +VELYAEKV
Sbjct: 34 EGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKV 93
Query: 264 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 443
RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR RAKSMK
Sbjct: 94 QNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMK 153
Query: 444 FVDGLMIHSGDPCNDYVNTATRHVLL 521
F DG MIHSG P D++++ATRHVLL
Sbjct: 154 FADGFMIHSGQPAVDFIDSATRHVLL 179
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 0.97
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 357 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 512
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 259 FSAYSSTDCSGILNRFCTTDVSSR 188
+ +Y S+DC G+L+R TD R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 11 EHFQKTKIVVMEFKAELNDSSQDWPRW 91
E Q T I + FKA L++S Q W W
Sbjct: 570 EIIQSTIIAEVSFKAWLSESFQVWGEW 596
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 117 HPYVQNHYYGHKTQSVLG-EKGRRIRELTSVVQKRFNIPEQSVELYAE 257
+PY+ N+YY H T E+ I +L + F P +V L E
Sbjct: 210 NPYLNNNYYTHDTVDTNALEENSWITKLDMQSLQHFRTPRINVVLIVE 257
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 420 GQRAKSMKFVDGLMIHSGDPCNDYVN 497
G+R K + F D H G P DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 477 PCNDYVNTATRHVL 518
PC+DYV A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 24.6 bits (51), Expect = 9.0
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Frame = -1
Query: 455 TIDKLHGLSSLTSQLA*YYYFTTASTR----FHDETKDTITRTTDCKTSNQFISERFS-- 294
T+ GL+++ + LA + + + H + + R D +++QF SERF+
Sbjct: 253 TVIDTEGLNAIKADLAKLFNLVESQRQKMDSLHFALTNALERLNDISSTSQFPSERFNAL 312
Query: 293 ---LSD--SAEPAGCYXXXXXXXXXLRDIKSLLHNRCQLTNSTTFL 171
L D SA+ + ++IK + N N T F+
Sbjct: 313 EKLLHDSLSAQSSTADGTSKHLAEFEKEIKKAMGNAYSPYNLTNFM 358
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 63 MIPHRTGRDGYSGVEVRSHPY 125
+ PHR GR RSHPY
Sbjct: 233 LAPHRVGRIASISGGARSHPY 253
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 319 INLYLRDSA*AIAQSPRVATFSAYSSTDCSGILNRFCTTDVSSRILRPFSPST 161
+ L L+ A+ ++ S+ +N F T SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,431
Number of Sequences: 5004
Number of extensions: 39445
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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