Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F05
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   226   7e-60
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    30   1.3  
01_06_1411 + 37127098-37128279                                         28   4.0  
08_01_0346 - 3063440-3064189                                           28   5.2  
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989...    28   5.2  
06_01_0782 - 5848381-5849394,5851143-5851255,5851337-5851440,585...    27   9.1  
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564...    27   9.1  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  226 bits (553), Expect = 7e-60
 Identities = 113/154 (73%), Positives = 124/154 (80%), Gaps = 1/154 (0%)
 Frame = +3

Query: 63  MIPHRTGRDGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQS 239
           M+      DGYSGVEVR  P   +      +TQ+VLGEKGRRIRELTSVVQKRFN PE  
Sbjct: 26  MLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPENG 85

Query: 240 VELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLR 419
           VELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR
Sbjct: 86  VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR 145

Query: 420 GQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLL 521
            QRAKSMKF DG MI SG P N Y+++A RHVLL
Sbjct: 146 AQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLL 179


>02_01_0598 +
           4440018-4440070,4440627-4440693,4440794-4440926,
           4441075-4441120,4442470-4442521,4442601-4442753,
           4443338-4443457,4443549-4443714,4443822-4443934,
           4444049-4444120,4444992-4445213,4445270-4445317,
           4445639-4445697,4445809-4445887,4445982-4446119,
           4446327-4446551,4446643-4447430,4447548-4447723,
           4447911-4448169,4448646-4448707,4451055-4451212,
           4451618-4451743,4452197-4452260,4452386-4452494,
           4452607-4452760,4453055-4453178,4453257-4453333,
           4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 89  WLLRCGGAFTPIRSKSLLWPQDAERAWRERS 181
           +L+R  G F PI S  ++WP+  E   R+R+
Sbjct: 213 FLMRTFGRFGPIASVKIMWPRTEEERRRQRN 243


>01_06_1411 + 37127098-37128279
          Length = 393

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 402 LLLHNREHQIP**NEGHHNTHD 337
           L LH R HQ P    GHH  HD
Sbjct: 94  LHLHLRHHQFPVYRRGHHPDHD 115


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 294 AESLRYKLIGGLAVRRACYGVLR 362
           A S    L+GG A   ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243


>01_07_0132 -
           41298184-41298558,41298648-41298729,41298850-41298977,
           41299059-41299157,41299279-41299434,41300709-41300783,
           41301962-41302137,41303210-41303252,41303336-41303503,
           41303584-41303731,41306316-41306587
          Length = 573

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 330 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 509
           A R A  G++  + + G  G     SG+ RGQ  +++  ++G +        +Y++ A  
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531

Query: 510 HVL 518
            +L
Sbjct: 532 EIL 534


>06_01_0782 -
           5848381-5849394,5851143-5851255,5851337-5851440,
           5851584-5851660,5851740-5852132,5852267-5852482,
           5852826-5852923,5853503-5853637,5853745-5853811,
           5853999-5854094,5854555-5854683
          Length = 813

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 104 GGAFTPIRSKSLLWPQD 154
           GG +T +R +SL+WP D
Sbjct: 55  GGLYTALRLESLVWPND 71


>01_06_1329 +
           36354340-36354493,36355781-36355942,36356279-36356457,
           36356719-36356918,36356938-36357014,36357110-36357111,
           36357594-36357701,36357806-36358024,36358167-36358448
          Length = 460

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -2

Query: 253 AYSSTDCSGILNRFCTTDVSSRILRPFSPS----TLCV 152
           A++ TD +G+L+  CT DV S++    S S    TLC+
Sbjct: 332 AHALTDRNGLLSLLCTPDVGSKLGGRASASRYTNTLCI 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,101,077
Number of Sequences: 37544
Number of extensions: 280258
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)