Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F05
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   225   1e-59
U58752-1|AAB00664.1|  377|Caenorhabditis elegans P38 map kinase ...    30   0.87 
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  225 bits (551), Expect = 1e-59
 Identities = 111/146 (76%), Positives = 123/146 (84%), Gaps = 1/146 (0%)
 Frame = +3

Query: 87  DGYSGVEVRSHPY-VQNHYYGHKTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 263
           DGYSGVEVRS P   +      +TQ+VLGE+GRRI+ELTSVVQKRF   E SVELYAEKV
Sbjct: 34  DGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKV 93

Query: 264 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 443
           + RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+VSGKLRGQRAK+MK
Sbjct: 94  SNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMK 153

Query: 444 FVDGLMIHSGDPCNDYVNTATRHVLL 521
           FVDGLMIHSG P NDY+  A RHV L
Sbjct: 154 FVDGLMIHSGHPVNDYIQQAVRHVQL 179


>U58752-1|AAB00664.1|  377|Caenorhabditis elegans P38 map kinase
           family protein 1 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +3

Query: 66  IPHRTGRDGYSGVEVRSHPYVQNHYYGHKTQSVLGEKG-----RRIRELTSVVQKRFNIP 230
           I H T R+GY  VE+    +V  +YY + T    G  G        R  T V  K+FN P
Sbjct: 10  ILHPTPREGYYVVELNRSVWVVPNYYINLTPIGTGAYGTVCAAECTRSGTRVAIKKFNRP 69

Query: 231 EQSV 242
            QS+
Sbjct: 70  FQSI 73


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 153 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 272
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z69385-1|CAA93424.2|  515|Caenorhabditis elegans Hypothetical
           protein ZK593.1 protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 99  GVEVRSHPYVQNHYYGHKTQSVLGEKGRRI 188
           GV++    +++N    HK + VLGEKG+ I
Sbjct: 220 GVDIIFASFIRNADGIHKIRQVLGEKGKHI 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,656
Number of Sequences: 27780
Number of extensions: 228566
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)