Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F04
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   0.58 
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   5.4  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   7.1  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   7.1  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   7.1  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    24   9.4  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 244 AMSWYITIFSSETQVPVRFTNIRNSKSRLWPHGNPGI 354
           A+ + + +FS   ++P    N  N  S +W   N GI
Sbjct: 262 ALEYVVPVFSDARRIPSYLANDANESSTIWECANIGI 298


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 YLGTDFQALVSQAGIIGHVMVYHNI 269
           Y+G D +AL + AGII    +++ I
Sbjct: 380 YVGADLKALTAAAGIIAIKRIFNEI 404


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 311 EIRNQDYGLMAIPASCIRCIRHSLFVRLYRQAGSPLG 421
           +I  Q++  +  P+ C RC+  + +VR+ ++   PLG
Sbjct: 8   DINKQEWEDVEFPSICERCLGDNSYVRMTKE---PLG 41


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
 Frame = +3

Query: 324 KIMASWQSRHPVSG-VYGIH---------CSSGYIGRQDPL 416
           +I+  W SRHP SG V GI            S YIG +DP+
Sbjct: 301 RILYVWASRHPASGYVQGISDLVTPFIQVFLSEYIGDKDPM 341


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 213 QALVSQAGIIGHVMVYHNIFLGN 281
           + L S  GI+G  ++ H++FLG+
Sbjct: 255 EGLYSSIGILGATVMPHSLFLGS 277


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 178 WNMLIGTWGQIFKL*LVRQAS*AMSWYITIFSSETQVPVRFTNIRNSKS 324
           WN L+  W  IFK  +   +  +  WY T     T   VR   I  S+S
Sbjct: 619 WN-LVNIWRHIFKETVTLNSGISCPWYGTNVKLFTVREVRQPTILQSRS 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,826
Number of Sequences: 5004
Number of extensions: 39216
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)