Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F04
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0105 - 5648436-5648536,5648650-5648692,5649152-5649244,564...    27   5.3  
05_04_0069 - 17639386-17641380                                         27   7.0  
11_01_0447 + 3464791-3465358,3465364-3465641                           27   9.2  

>03_02_0105 -
           5648436-5648536,5648650-5648692,5649152-5649244,
           5649424-5649553,5649631-5649747,5650667-5650715,
           5651139-5651229,5651381-5651473,5651565-5651611,
           5651719-5651779,5651973-5652051,5652184-5652284,
           5652409-5652476,5652593-5652650
          Length = 376

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 256 YITIFSSETQVPVRFTNIRNSKSRLWPHGNPGILY 360
           Y++  S+E +VPVR+  +R  K    PHG+ G LY
Sbjct: 63  YVSSISNELRVPVRY--LREDK----PHGSAGGLY 91


>05_04_0069 - 17639386-17641380
          Length = 664

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 352 CRDCHEAIILISNFE 308
           C DCHEA+  IS+FE
Sbjct: 624 CGDCHEAMKFISSFE 638


>11_01_0447 + 3464791-3465358,3465364-3465641
          Length = 281

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 328 LWPHGNPGILYQVYTAFTVRQAI*AGRIPFGLDVLHDV 441
           +WPH    +    Y A+ VRQA+          VLH+V
Sbjct: 118 VWPHYVTAVTLSNYRAYLVRQALVPDNGLVAYKVLHEV 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,309
Number of Sequences: 37544
Number of extensions: 246498
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)