Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F04
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   0.88 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   0.88 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.7  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    21   6.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 9   GGLQGIGTRFLCSLDRYHKRTCGRKSRYFRNMLRLKEIIIK 131
           GG  G+G R  C  +    R  GR  R+  N++  K + IK
Sbjct: 26  GGFGGLGGRGKCPSNEIFSRCDGRCQRFCPNVVP-KPLCIK 65


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 9   GGLQGIGTRFLCSLDRYHKRTCGRKSRYFRNMLRLKEIIIK 131
           GG  G+G R  C  +    R  GR  R+  N++  K + IK
Sbjct: 26  GGFGGLGGRGKCPSNEIFSRCDGRCQRFCPNVVP-KPLCIK 65


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 239 HRPCHGISQYFPRKLKFQYVLQIFEIRNQDYGLMAIPAS 355
           HR       Y PR  K     + F ++N  YG+   P +
Sbjct: 227 HRLTSNTFDYDPRYTKLTVAGESFTVKNGIYGIALSPVT 265


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 95  QKYVAPQRNNY 127
           QK++ PQ NNY
Sbjct: 128 QKFIFPQENNY 138


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 54 DPKNKETSCRFPAGPP 7
          DP++      FP GPP
Sbjct: 41 DPRSNRGPVLFPPGPP 56


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 208 SVPKYL*AYSSNTINNQ 158
           S+P +   YS  +INNQ
Sbjct: 793 SMPNFADFYSEESINNQ 809


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,679
Number of Sequences: 438
Number of extensions: 2778
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)