Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F03
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 101 6e-23
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 40 2e-04
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 38 9e-04
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 36 0.004
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.005
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 36 0.005
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 35 0.006
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 35 0.008
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 33 0.019
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.034
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 32 0.045
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 32 0.059
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 31 0.10
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 31 0.10
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.10
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 30 0.24
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 28 0.73
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 28 0.96
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 27 1.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 2.9
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 2.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.1
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 5.1
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 6.8
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 9.0
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 9.0
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 101 bits (242), Expect = 6e-23
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 25/186 (13%)
Frame = +1
Query: 28 GVLHLYXXXXXXXXXXXXT---LCLLSVPGALGASDLLAFAAACQ-QDIAHVRVLRDGSP 195
GV+HLY L +L++P + SD+L F + I H+R+L+ P
Sbjct: 67 GVVHLYRVFPSESHEFDAPGLILAILAIPLYMSPSDVLGFLGEKHCKSIQHIRLLKTKDP 126
Query: 196 DHYMALLTFRTSDAAREFHGAFDGVPYSSLEPNALCHMAWVSRV---------------- 327
+ MALL F+ + F+ F+G +S ++P CH+ + +V
Sbjct: 127 NRIMALLKFKDQASVIRFYTEFNGKAFSQIDPET-CHVLHIDKVNIKYPMESSDSSSTEQ 185
Query: 328 EWARNGTAP-----PSHTELPTCPVCLERMDESVAGVLSVQCAHAFHADCLTRWRDARCP 492
+ + P P+ ELPTC VCLERMD S+ G++++ C H FH CL +W ++ CP
Sbjct: 186 QLVGPSSKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSSCP 245
Query: 493 VCRCAQ 510
VCR Q
Sbjct: 246 VCRYTQ 251
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 39.9 bits (89), Expect = 2e-04
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 376 TCPVCLERMDES-VAGVLSVQCAHAFHADCLTRWRD--ARCPVCR 501
TCP+C + M+E+ + C H F +CL +W + CP+CR
Sbjct: 106 TCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCR 150
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 37.9 bits (84), Expect = 9e-04
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +1
Query: 436 CAHAFHADCLTRWRDAR--CPVCRC 504
C H +H CL +W + R CPVCRC
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCRC 671
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 35.9 bits (79), Expect = 0.004
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +1
Query: 436 CAHAFHADCLTRW----RDARCPVCRCAQT 513
C H FHA CL +W +RCP+CR + T
Sbjct: 1579 CRHKFHASCLYKWFKSSNSSRCPLCRSSFT 1608
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 35.5 bits (78), Expect = 0.005
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 343 GTAPPSHTELPTCPVCLERMDESVAGVLSVQCAHAFHADCLTRWRDA---RCPVCR 501
G P S T+ C VCL + + QC H FH +C+ +W + CP+CR
Sbjct: 514 GVFPFSGTD-ERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRW-RDAR--CPVCRCAQTP 516
C +CLE + V+++ C H FH C+ +W D R CP C P
Sbjct: 321 CVICLESFTKGDK-VVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVPP 368
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 35.1 bits (77), Expect = 0.006
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRWR--DARCPVCRCAQTP 516
C +C+E M + V+ + C H FH +C+ W + C +CR P
Sbjct: 396 CTICME-MFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDP 442
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRW--RDARCPVC 498
CP+C E M S V+ + C+H H C + + RCP C
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 33.5 bits (73), Expect = 0.019
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRW---------RDA-RCPVCRCAQT 513
C VC + ++ S + C H FH C+ +W DA RCP C+ QT
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQSNQT 251
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 32.7 bits (71), Expect = 0.034
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRW--RDARCPVCR 501
CP+C E + + C H + +CL W CP CR
Sbjct: 85 CPICTEALQRP----FTTHCGHTYCYECLLNWLKESKSCPTCR 123
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 32.3 bits (70), Expect = 0.045
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQ---CAHAFHADCLTRWRDAR--CPV 495
C C D + A +V C HAFH C++RW + R CP+
Sbjct: 52 CIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPL 95
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 31.9 bits (69), Expect = 0.059
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRWRD---ARCPVCRCAQTPE 519
CP+C+E +D S QC + C ++ RCP CR T E
Sbjct: 18 CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLYTEE 67
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 31.1 bits (67), Expect = 0.10
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 421 VLSVQCAHAFHADCLTRW-RDAR-CPVCR 501
+ + C H FH CL W R A CP+CR
Sbjct: 51 IAKIPCGHYFHNHCLESWCRVANTCPLCR 79
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 31.1 bits (67), Expect = 0.10
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +1
Query: 436 CAHAFHADCLTRW--RDARCPVCR 501
C H H CL W R CP+CR
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICR 351
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 376 TCPVCLERMDESVAGVLSVQCAHAFHADCLTRW---RDARCPVCR 501
+C +CLE C H FH C+ +W + CP+CR
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSV-QCAHAFHADCLTRW---RDARCPVC 498
C +C D + +L V C H FH C+ W A CP+C
Sbjct: 205 CIICYA--DYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLC 246
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRW 474
CP C D ++ +C H FHA C+ W
Sbjct: 35 CPQCTSPGDN--CPIVWGKCKHIFHAHCIQNW 64
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 0.96
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRW---RDARCPVCRCAQT 513
C +CL E + C H FH C+ + CP+C+ + T
Sbjct: 498 CTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVT 545
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 290 QTPCAIWLGCRESNGPGTELHRL 358
QTP +W+GC +S P T + L
Sbjct: 70 QTPQVLWIGCSDSRVPETTILNL 92
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 376 TCPVCLERMDESVAGVLSVQCAHAFHADCLTRWRDAR 486
TC +C DE S +C H F C ++ D+R
Sbjct: 130 TCEICY---DEGCLPFFSAECDHEFCLACYRQYLDSR 163
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLT 468
CP+C +E + L + C HA DCL+
Sbjct: 877 CPICC---NEPIQNPLLLNCKHACCGDCLS 903
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 172 SHAQCPADKQQQMLTNLMHLELQALTIGRESLPLQLPS 59
+HA D+ +LT + + LQ + I SLP QL S
Sbjct: 2666 AHASLILDQFNAILTTIFNNPLQQIEILENSLPTQLLS 2703
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 424 LSVQCAHAFHADCLTRWRDARCPVCR 501
+S C H H DC T + CP C+
Sbjct: 805 VSYSCLHLVHRDCAT---ETVCPKCK 827
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = +1
Query: 379 CPVCLERMDESVAGVLSVQCAHAFHADCLTRWRDARCPVC 498
CP+ M ++ V C H F L ++ + C C
Sbjct: 105 CPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQC 144
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +1
Query: 436 CAHAFHADCLTRWRDARCPVCRCAQTP 516
C HAF ++C+ + + + C +TP
Sbjct: 655 CGHAFCSNCMEPFYEHKTSTCPQCETP 681
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -1
Query: 240 GCITCTKCK 214
GC++CTKCK
Sbjct: 507 GCLSCTKCK 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,137
Number of Sequences: 5004
Number of extensions: 39938
Number of successful extensions: 133
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -