Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F02
         (146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   1.8  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    23   4.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    22   9.6  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    22   9.6  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    22   9.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    22   9.6  
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    22   9.6  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 83  RTPERRQHLSPEWRV-RQQRMP 21
           +TP++ + L P W   R+Q+MP
Sbjct: 354 QTPQKPEQLHPSWEAKRKQKMP 375


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 146  DHVLAAGRLRGAHAEQQPLLPRTPERRQHLSPE 48
            D  +   +L+ A   Q+P +PRT  R+ H  P+
Sbjct: 1404 DEEVLRAKLKAAERLQKPAIPRT-RRKGHTEPK 1435


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 15  FPRHSLLPDTPLGRQVLAALRCAWEQRLL 101
           F  H LL + PL       L+  WE+R L
Sbjct: 171 FKLHKLLIENPLPSYTSEELKFNWEERRL 199


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 98  QPLLPRTPERRQHLSPEWRVRQQRMPRK 15
           QP++P+    +Q ++P+    Q  MP++
Sbjct: 594 QPMMPQRTGMQQPMAPQRTGMQPMMPQR 621


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 77  PERRQHLSPEWRVRQQRMPRKPDP 6
           PE+ ++   +WR+ ++     PDP
Sbjct: 173 PEKSEYTLKQWRIFEKAAGCLPDP 196


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 101 QQPLLPRTPERRQHLSP 51
           Q P  P +P+   HLSP
Sbjct: 326 QSPSCPPSPKNNAHLSP 342


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 80  TPERRQHLSPEWRVRQQRMPRK 15
           TP++RQ L  + +++QQR  ++
Sbjct: 141 TPQQRQFLLQQSQIQQQRQQQQ 162


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 84  WEQRLLFGVC 113
           WE+ +LFG+C
Sbjct: 65  WERYMLFGIC 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,561
Number of Sequences: 5004
Number of extensions: 5566
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)