Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F02
(146 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0034 - 401208-402923 29 0.39
03_01_0332 + 2621058-2621348,2621505-2622263 27 2.8
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 26 3.6
04_04_0887 + 29095087-29096166 26 4.8
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 25 6.4
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829... 25 6.4
08_02_0973 - 23198643-23198996,23199019-23199124,23199377-23199558 25 8.4
07_03_1247 - 25161068-25161197,25161351-25161418,25161515-251616... 25 8.4
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 25 8.4
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 25 8.4
>04_01_0034 - 401208-402923
Length = 571
Score = 29.5 bits (63), Expect = 0.39
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 134 AAGRLRGAHAEQQPLLPRTPERRQHLSPEWRVRQQR-MPRKPDP 6
AA +R AEQQP PR P + + P +QQR P +P P
Sbjct: 281 AAPPMRAPLAEQQPHAPRLPLQPRPAPPPPPPQQQRAKPSRPPP 324
>03_01_0332 + 2621058-2621348,2621505-2622263
Length = 349
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 143 HVLAAGRLRGAHAEQQPLLPRTPERRQHLSPEWR 42
H LAA L + QP L P + HL EW+
Sbjct: 219 HHLAAADLSSLELDSQPQLLVGPWKELHLPEEWK 252
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = -1
Query: 116 GAHAEQQPLLPRTPERRQHL----SPEWRVRQQ--RMPRKPDP 6
G+ ++QQP PR+ R Q + P+ + QQ R PR P P
Sbjct: 592 GSSSQQQPQQPRSAPRPQFVVRVPQPQQQQNQQGTRAPRPPTP 634
>04_04_0887 + 29095087-29096166
Length = 359
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 95 PLLPRTPERRQHLSPEWRV 39
P RTP RR+H P WR+
Sbjct: 341 PPRQRTPPRRRHPLPAWRL 359
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 86 PRTPERRQHLSPEWRVRQQRMPRKPDPR 3
P+TP + + R RQ++ P+KP R
Sbjct: 97 PKTPTQSEPKRQRQRQRQRQQPKKPKKR 124
>03_02_0420 -
8298303-8299265,8299351-8299431,8299546-8299668,
8299815-8299983,8300108-8300478
Length = 568
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 116 GAHAEQQPLLPRTPERRQHLSPEWR 42
GA A ++PL+ P+R Q+ P +R
Sbjct: 447 GAGAPREPLVSLAPQRGQYRDPPYR 471
>08_02_0973 - 23198643-23198996,23199019-23199124,23199377-23199558
Length = 213
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 71 RRQHLSPEWRVRQQRMPRKP 12
RR+ + P WR R +R R+P
Sbjct: 167 RRRRMDPPWRGRDRRGVRRP 186
>07_03_1247 -
25161068-25161197,25161351-25161418,25161515-25161610,
25161866-25161940,25162364-25163008
Length = 337
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 125 RLRGAHAEQQPLLPRTPERRQHL 57
R GA + +LPRTPER + L
Sbjct: 169 RRGGAERVEDVMLPRTPERMRRL 191
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 89 LPRTPERRQHLSPEWRVR 36
LP ER+QHLS +RVR
Sbjct: 421 LPLGDERKQHLSKTFRVR 438
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 74 ERRQHLSPEWRVRQQRMPRKP 12
ER+ ++PE R+Q MP KP
Sbjct: 218 ERKSKVTPEVHERKQEMPVKP 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,542
Number of Sequences: 37544
Number of extensions: 52716
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 29
effective length of database: 13,704,572
effective search space used: 260386868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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